PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0095s0061.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 546aa    MW: 61324.8 Da    PI: 7.7022
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0095s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.91.7e-10470160
              trihelix  1 rWtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkr 60
                          +Wt +e++aL+ea  e++++ r       ++++   +W++v+kk+r+rg++rs k C+++w  l+++
  Sphfalx0095s0061.1.p  4 EWTLEETRALVEAHIELKQHERpipqgsnSRAASDSHWDKVAKKLRDRGYHRSFKSCNKRWYRLEQY 70
                          5*************9998888844432222358899*************************999875 PP
2Myb_DNA-binding23.21.7e-07467347
                          SS-HHHHHHHHHHHHHTTTT................-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg................tWktIartmg...kgRtlkqcksrwqky 47
                           WT eE   lv+a+ +l  +                +W+++a+++     +R+ k+c  rw+ +
  Sphfalx0095s0061.1.p  4 EWTLEETRALVEAHIELKQHerpipqgsnsraasdsHWDKVAKKLRdrgYHRSFKSCNKRWYRL 67
                          6*****************99*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-4170IPR001005SANT/Myb domain
PROSITE profilePS500907.7168IPR017877Myb-like domain
PfamPF138371.1E-8369No hitNo description
Gene3DG3DSA:1.10.10.601.7E-5466IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAREWTLEET RALVEAHIEL KQHERPIPQG SNSRAASDSH WDKVAKKLRD RGYHRSFKSC  60
NKRWYRLEQY EVQIFSFNIE EAGNHGPNYW ELTSAERYEH RANKWPQLPL GEGIDKEIFD  120
LIKRFSRGCV EKKVITQSTA PILGLNNTRH AALPEAMVVA PPQVVLEEAK EPKNLEGNSC  180
WSSLIAHQTV VPSQDPLDGF KLQARELRKQ RATELRRGNR TVPYNANHTT FVKAYQAPQV  240
VSQAPNIGKT IPQQKKSLTP VAESAKSSSA VPTSELTDLG SKTKASVQSS SGTSAAHQVQ  300
KEKTNSPSFD SAPFPYKLEM DLLPQPAHIH LSSQLSHSEV PNVTPLPLQP ATDKPTTHQT  360
SNSSTTNFPV VLQSINSHLP LLQPTDNNNM QQPQHHQHLA TMMTDHNLQH SMLNGDNLLP  420
PELLELSFQE QLEVLLSVHN HDAVPQQNKR EQSHRPEVMQ QTWQCWQAPP SSQQWRDQYG  480
SAAGHGSSHH HRIQGVAIGN LEMQLHALVN LLQARNNAEQ QYQDKMLLSF ESMAISLHTI  540
AQGNV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-