PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0095s0033.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ARF
Protein Properties Length: 827aa    MW: 90864.5 Da    PI: 6.3595
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0095s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24166266198
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ aee+       ++++++ +l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F 
  Sphfalx0095s0033.1.p 166 FCKTLTASDTSTHGGFSVPRRAAEEClpeldyTMNPPCQ-ELVAKDVHGVEWKFRHIYRGHPRRHLLTTGWSVFVSSKRLVAGDSVLFL 253
                           99*****************************97777785.9************************************************ PP

                           E-SSSEE..EEEEE- CS
                    B3  84 ldgrsefelvvkvfr 98 
                           +   ++++l+++v+r
  Sphfalx0095s0033.1.p 254 R--GENEQLRLGVRR 266
                           3..367777999988 PP

2Auxin_resp115.25.6e-38292374183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa++k  F+v+Y+P++++seFv++++k++ka++++vsvGmRfkm+fe+eds err +Gt++g+ d+dpvrWpnS WrsLk
  Sphfalx0095s0033.1.p 292 AAHAATEKLRFSVIYHPSTCSSEFVIPYHKYMKAINSSVSVGMRFKMRFESEDSTERRHAGTITGIGDVDPVRWPNSYWRSLK 374
                           79*******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-40158280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-41162295IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-22165266No hitNo description
PfamPF023626.3E-22166266IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351166268IPR003340B3 DNA binding domain
SMARTSM010191.3E-23166268IPR003340B3 DNA binding domain
PfamPF065073.0E-34292374IPR010525Auxin response factor
PfamPF023091.5E-5718754IPR033389AUX/IAA domain
SuperFamilySSF542771.52E-10719797No hitNo description
PROSITE profilePS5174529.822719802IPR000270PB1 domain
PfamPF023096.7E-7765798IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MMSESNFRVP AAAAAATMRS CNGGGSGVVA LQQHISPPMS QCPLPSSSDS SPVGIPGNED  60
LDSELWHACA GPLISLPPVN SLVVYWPQGH LEQVANCTPQ AAVQPPIPQY NLPPHILCRL  120
TDITLMAHPD TDKVYAQMDL TPVRESEKPL VAEEPPPAVE RKSNSFCKTL TASDTSTHGG  180
FSVPRRAAEE CLPELDYTMN PPCQELVAKD VHGVEWKFRH IYRGHPRRHL LTTGWSVFVS  240
SKRLVAGDSV LFLRGENEQL RLGVRRALKQ QQDAPSMVVS NQSTHIGVLA TAAHAATEKL  300
RFSVIYHPST CSSEFVIPYH KYMKAINSSV SVGMRFKMRF ESEDSTERRH AGTITGIGDV  360
DPVRWPNSYW RSLKVEWDES MASGRHERAS LWEIEPFNSV ATLPPPSLGQ NPSQKRRPVR  420
PTLVTCRNTP ESFHSTKLAR VLVHDQGGLK LREDEEGGTS WSLSGRAVKC EEVLKTPLMG  480
QDRTGAEGWL PMQQPEICPG VEIPHGLPRA DFTGVLTREP SQHNVEREKE HLRLCVQNYL  540
REPKEHKDSP SPRLSSTGYG KPWYGSEDMQ ISVNSSSIWD PTMKLPWPSN LPHVPSVPES  600
EHPSSPAPIW PATSAFPDAA ASLSRSLGAR GEFFPSWEDQ EGKVLAPTPP PSKPQCKLFG  660
FALNGDNAPN PAPSADLPKE AEMDVEPLSS GPTNSGGSNS QELAVKSGAV MKLPSFPVRS  720
FIKVHKQGEP GRSIDLTRYE SYTELRRALE QMFSLHGQLE TPAKQWQLVY TDHEGDVLLV  780
GDDPWGEFCS CVRSLKILSP TIEGGSEDEV QADLQDTTSP LMPGTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-127544019359Auxin response factor 1
4ldw_A1e-127544019359Auxin response factor 1
4ldw_B1e-127544019359Auxin response factor 1
4ldx_A1e-127544019359Auxin response factor 1
4ldx_B1e-127544019359Auxin response factor 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024398385.10.0auxin response factor 7-like isoform X2
RefseqXP_024398386.10.0auxin response factor 7-like isoform X2
RefseqXP_024398387.10.0auxin response factor 7-like isoform X2
RefseqXP_024398388.10.0auxin response factor 7-like isoform X2
TrEMBLA0A2K1J7D00.0A0A2K1J7D0_PHYPA; Auxin response factor
STRINGPP1S341_4V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.21e-131auxin response factor 8