PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0094s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | Trihelix | ||||||||
Protein Properties | Length: 259aa MW: 29597.9 Da PI: 8.5818 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51 | 3.9e-16 | 28 | 115 | 1 | 84 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rWtk+e+l+L++a+++ e+ +g + +W v +++++ g+ r + qC+++w +l k+ykkik++e+ r ++ s + + Sphfalx0094s0015.1.p 28 RWTKHETLTLVAAKKKEIEKTLDGTargidtASDVKWVTVFQYCKQFGVDRDASQCRKRWHSLYKDYKKIKDHENLR--GVGSYWTMSA 114 8************996555555432233333999*****************************************96..6666676655 PP trihelix 84 q 84 + Sphfalx0094s0015.1.p 115 E 115 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.086 | 28 | 91 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-4 | 28 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.3E-11 | 28 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MCVIITMTGE GGDSQKVEAI DKGPRGLRWT KHETLTLVAA KKKEIEKTLD GTARGIDTAS 60 DVKWVTVFQY CKQFGVDRDA SQCRKRWHSL YKDYKKIKDH ENLRGVGSYW TMSAELRREH 120 KLAASFERDI FEALEMYCRR MPAIAPKAAF DNVPSSYKKS VDLIPEVQEG PMQEDLLMDN 180 GDADDEAGVY PMGKKKKKRQ REPMEEQLIS VLERSSQDLQ RHLSLDRELR KEQSRGLVEV 240 LNKLVDVIGT MAEAMQKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 200 | KKKRQR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373724.1 | 3e-78 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024374422.1 | 3e-78 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A2K1KPL3 | 7e-77 | A0A2K1KPL3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S60_28V6.1 | 1e-77 | (Physcomitrella patens) | ||||
STRING | PP1S60_31V6.2 | 1e-77 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 3e-32 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0094s0015.1.p |