PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0093s0087.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 907aa    MW: 96721.4 Da    PI: 6.7126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0093s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038163187123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++C+  +Cg +F+ ks+L +H  +H
  Sphfalx0093s0087.1.p 163 FRCEvpNCGSTFKEKSHLSHHSLVH 187
                           89*******************8877 PP
2WRKY95.63.5e-30431490159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Sphfalx0093s0087.1.p 431 MNDGCQWRKYGQKLAKGNPCPRAYYRCTVAsGCPVRKQVQRCADDMSILVTTYEGTHNHP 490
                           58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-5163187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803163187IPR007087Zinc finger, C2H2
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.20.25.802.9E-32416492IPR003657WRKY domain
SuperFamilySSF1182901.12E-27424492IPR003657WRKY domain
PROSITE profilePS5081129.528426492IPR003657WRKY domain
SMARTSM007746.3E-37431491IPR003657WRKY domain
PfamPF031067.7E-27432490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MGELGIMKRG FSTSGRVDRV TEIDLSVKLE EENDDCDQDR GSDDVQDIDA TRRPSDPYRL  60
SLRPFQYTKA LLDEEASSPV AGDQQLHQTF NQPRSPSKIN ADQDAKPVHP TEGGAIFTSS  120
RTQVSRAEDI VRSEDIEMEE AVHNNNNNIR AEIRSAEIFN ASFRCEVPNC GSTFKEKSHL  180
SHHSLVHGIS NSAPASERST VEDGSPPSSP TLQLRPEYTV AQAEITRLGE ENNQLRLMLA  240
HVTSEYHNLR LFLISAMQQE RQFPTADAQS NQLSHLVQGV AVSTKTHEGM SAPAEPTVQA  300
ESNPVAGLYS STTHAATSSV LHNDQKRGFP GYKEEEEGSM NEVRKVAASS ARAGHEQKAA  360
PDRFHPNSPH DHEEDQSPRH LQAAAPQTET IPDWQPHKLL KTSGTPLMVE DQSGVRKARV  420
SVRARSDAPT MNDGCQWRKY GQKLAKGNPC PRAYYRCTVA SGCPVRKQVQ RCADDMSILV  480
TTYEGTHNHP LPPAAAAMAS STSAAAGMFL AGSTSSNDFA TRMVGGTAAA FYQLSGAAAV  540
GLQGSSSNCA PPANSCIPTI SACTPVPTVT LDLTSHAAAA HLNRNLPGSA DHSDQHAHGA  600
ATPVLASNIQ YFNSPSFLQQ GSTGAGPAIT NSSDHPAGGH HGMMGTAVST SASQSGQQLP  660
ATVQALHARQ IPFFPSNGMY NTAAATSFAP LAGTTTTSGS DQFNQARENN YSTIAGYGVV  720
QNQLQVLHDQ SLSLQSKTPA STCDKSTADA GQAFSDSISA ATAAITSHPR FTEAIAAAIS  780
SIMISQNMQN PIPTSNNGVV NIASQESNTA TPPTPPSTAN IMLNNSMPRS NRSQSPSHMT  840
NSAPNSPNRS DTQHHRSESP SNSSGNIMLK SPASPVHLLQ SDHSRCTNNP ATTNFLAGRR  900
EKQLRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21418494176WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-44WRKY family protein