PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0092s0007.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 545aa    MW: 61541.1 Da    PI: 5.7262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0092s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.21.6e-21180259286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           Wt+ e+l+Li++r ++e r+ ++ +k  lW+e++++++++ ++r ++qC++kwe+l   yk++++g k+r  e     p++d+l+
  Sphfalx0092s0007.1.p 180 WTRPETLHLIRLRAQLEPRFAKSGRKTELWDEIAEALQREHITRDAQQCRDKWEKLTAGYKEVRDGIKDR--E---DNPFYDELH 259
                           ********************************************************************97..3...448999986 PP
2trihelix65.31.4e-20455534286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W++ evl+Li++r eme r++++ ++++lW+e ++ +  +g++r  kqC+ekw++l  +yk + +g++++  ++    pyf +l+
  Sphfalx0092s0007.1.p 455 WKRAEVLQLIKLRGEMEARFGKSTRRAGLWDELAELLLVQGIKRDGKQCREKWDKLMAEYKDVSDGKRDQ--QE---SPYFAELT 534
                           ********************************************************************94..44...59999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.386172236IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-4175236IPR009057Homeodomain-like
SMARTSM007170.0047176238IPR001005SANT/Myb domain
CDDcd122031.00E-22178243No hitNo description
PfamPF138371.1E-18178260No hitNo description
PROSITE profilePS500908.327447511IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-4448512IPR009057Homeodomain-like
SMARTSM007170.0094451513IPR001005SANT/Myb domain
CDDcd122033.59E-22453517No hitNo description
PfamPF138378.7E-17453535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MYNSQSQLPT HVRASQATLF HAIQVAEHNS NNNKRNNNNG TDEDEDDDDE YGGTEEPVPS  60
SSEEPATAKE DEEAPAAAAA VAGLVEEGDN NKNEAQAIVS QSSPTQSSLN QSVETSSVAP  120
GATRTVHSTS MSTLLALSEQ QQQQQPELKL SGGENGASGA DEEEQKTQRE REHKKRSKNW  180
TRPETLHLIR LRAQLEPRFA KSGRKTELWD EIAEALQREH ITRDAQQCRD KWEKLTAGYK  240
EVRDGIKDRE DNPFYDELHP LLSGKSMKRE RERDEYVRNR DSLGRELTKD MTMSHHEMGQ  300
EVAGREKDHR DGGRLDSLRD EDDNEEEADV RPLGRKKKRG QKHMPVTDVA AVQSVLETVV  360
SRQQKFFRDL LDSMERKEMV REQMRLEKEE KWRAEERAHR GIFHNAMIIL TQKLVGENIS  420
PTMTTAGVAA ATTTAPVVVG SPEGPQGPKR RSKNWKRAEV LQLIKLRGEM EARFGKSTRR  480
AGLWDELAEL LLVQGIKRDG KQCREKWDKL MAEYKDVSDG KRDQQESPYF AELTSILGRS  540
AEAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395857.11e-179trihelix transcription factor GTL1-like
TrEMBLA0A176VSF20.0A0A176VSF2_MARPO; Uncharacterized protein
TrEMBLA0A2R6WAH20.0A0A2R6WAH2_MARPO; Uncharacterized protein
STRINGPP1S224_109V6.11e-178(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.19e-13Trihelix family protein