PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0090s0058.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family E2F/DP
Protein Properties Length: 319aa    MW: 35459.8 Da    PI: 6.2543
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0090s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.39.6e-2743123171
               E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           +++k+Lr+++ k   ++ek+e+ g++t+neva+eLvse             d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Sphfalx0090s0058.1.p  43 KNGKGLRHFSLK---VCEKVESkGRTTYNEVADELVSEytnpdsprispdqDEKNIRRRVYDALNVLMAMGIILK-DKKDIQWKG 123
                           579*********...*****999****************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-4239127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3143123IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.3E-2445123IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-2046124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011386.6E-48138299IPR014889Transcription factor DP, C-terminal
CDDcd144581.33E-36144239IPR014889Transcription factor DP, C-terminal
PfamPF087812.8E-34145248IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.37E-37146242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGSNNRIDSR LLHLDGGDDP DSPETEVIGG KKKRGPRAST GEKNGKGLRH FSLKVCEKVE  60
SKGRTTYNEV ADELVSEYTN PDSPRISPDQ DEKNIRRRVY DALNVLMAMG IILKDKKDIQ  120
WKGLPSSASL DNDQELHGEG MRVRDRKERI ERIEKKAAYL HDLQAQMTGL ENLVSRNERL  180
YHGTNSVPAG GVTLPFILVQ TQPQATVEVE ISEDMQVVHF DFNSTPFELH DDAYVLKALS  240
LQEHQGAKST EVMGRRGFDD GLGCKFEEDS SPLSSIFQHS SFPPRTSPYY PVSMPSVAKG  300
SLGMLQVSSS RVKQENLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3837129194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372178.11e-135transcription factor-like protein DPB isoform X2
SwissprotQ9FNY27e-91DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2K1KU621e-134A0A2K1KU62_PHYPA; Uncharacterized protein
STRINGPP1S74_252V6.11e-135(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-89Transcription factor DP