PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0090s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YB | ||||||||
Protein Properties | Length: 154aa MW: 16802 Da PI: 4.5226 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 73.9 | 2.5e-23 | 10 | 97 | 4 | 91 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +d lP a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +e+++ti+++ +l al lGf +y++++++ ++++ Sphfalx0090s0032.1.p 10 DDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYLAEVQAAYEQHK 97 6889*************************************************************************99987666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-38 | 8 | 141 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.61E-34 | 10 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.6E-22 | 13 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MESAGSRPKD DVSLPKATMT KIIKEMLPPD VRVAKDAQDL LVECCVEFIN LISSESNEIC 60 SKEEKRTIAP EHVLRALEIL GFGEYLAEVQ AAYEQHKNET MESPKVGGRW GKEGGGGMTE 120 EEAIAAQQRM FAEARARMNS GTTIAPTQTN DSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-38 | 10 | 135 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002965285.2 | 7e-88 | protein Dr1 homolog | ||||
Refseq | XP_024516159.1 | 7e-88 | protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-71 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | D8R2T0 | 2e-86 | D8R2T0_SELML; Uncharacterized protein | ||||
STRING | EFJ12470 | 3e-87 | (Selaginella moellendorffii) | ||||
STRING | EFJ34123 | 3e-87 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-66 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0090s0032.1.p |
Publications ? help Back to Top | |||
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