PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0090s0017.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YB
Protein Properties Length: 154aa    MW: 16761.9 Da    PI: 4.5226
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0090s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.92.5e-231097491
                 NF-YB  4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                          +d  lP a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +e+++ti+++ +l al  lGf +y++++++  ++++
  Sphfalx0090s0017.1.p 10 DDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKEEKRTIAPEHVLRALEILGFGEYLAEVQAAYEQHK 97
                          6889*************************************************************************99987666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-388141IPR009072Histone-fold
SuperFamilySSF471132.02E-3410142IPR009072Histone-fold
PfamPF008088.6E-221377IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MESAGSRPKD DVSLPKATMT KIIKEMLPPD VRVAKDAQDL LVECCVEFIN LISSESNEIC  60
SKEEKRTIAP EHVLRALEIL GFGEYLAEVQ AAYEQHKNET MESPKVGGRW AKEGGGGMTE  120
EEAIAAQQRM FAEARARMNS GTTVASTQAN DSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-381013512133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386306.15e-89protein Dr1 homolog isoform X2
SwissprotP495922e-71NC2B_ARATH; Protein Dr1 homolog
TrEMBLA9T7Z61e-87A9T7Z6_PHYPA; Predicted protein
STRINGEFJ124706e-87(Selaginella moellendorffii)
STRINGEFJ341236e-87(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.27e-74nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]