PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0088s0085.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 338aa MW: 36622.8 Da PI: 9.3373

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0088s0085.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.6e-34	71	125	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl Sphfalx0088s0085.2.p 71 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKFRL 125 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.568	68	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-33	68	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	71	126	IPR006447	Myb domain, plants
SuperFamily	SSF46689	8.6E-17	71	126	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-8	73	123	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-22	173	220	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MYQIKKYTAA NPAGSLMQQP GLHRPQQSTT SSPAHQQQLQ ERPSLYGRNS NGLLSADAGV 60 MNSSSSAADP KPRLRWTPEL HERFVDAVTQ LGGADKATPK SVMRVMGVKG LTLYHLKSHL 120 QKFRLGKQLH RDTNVHDANK DGPHESSDHM QVTSTTASDS VAALQTKNPQ DNIQITEAIR 180 LQMEVQHRLQ QQLEVQRNLQ LRIEAQGKYL QSILEKAKET LAGHRSSSPG LEAAHAELTE 240 LASKVGNDPS GCSFSLVSLP GIHNNPELLL QHVVDPRGGA SSQQQQLPRQ QSRMSDSSSQ 300 KSYLTSLTAN PEDSGGASGG GGEQQQQQAA TGIVRQC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-20	71	127	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	71	127	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	71	127	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	71	127	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373739.1	1e-106	protein PHR1-LIKE 3-like
Swissprot	Q94A57	5e-67	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2K1KNR0	1e-105	A0A2K1KNR0_PHYPA; Uncharacterized protein
TrEMBL	A9RJW4	1e-105	A9RJW4_PHYPA; Predicted protein
STRING	PP1S13_270V6.1	1e-106	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	8e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0088s0085.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]