PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0088s0085.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family G2-like
Protein Properties Length: 482aa    MW: 51576.9 Da    PI: 8.6738
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0088s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-3371125155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl
  Sphfalx0088s0085.1.p  71 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKFRL 125
                           79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.56868128IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-3368126IPR009057Homeodomain-like
SuperFamilySSF466891.49E-1671126IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2371126IPR006447Myb domain, plants
PfamPF002496.0E-873123IPR001005SANT/Myb domain
PfamPF143792.4E-22173220IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MYQIKKYTAA NPAGSLMQQP GLHRPQQSTT SSPAHQQQLQ ERPSLYGRNS NGLLSADAGV  60
MNSSSSAADP KPRLRWTPEL HERFVDAVTQ LGGADKATPK SVMRVMGVKG LTLYHLKSHL  120
QKFRLGKQLH RDTNVHDANK DGPHESSDHM QVTSTTASDS VAALQTKNPQ DNIQITEAIR  180
LQMEVQHRLQ QQLEVQRNLQ LRIEAQGKYL QSILEKAKET LAGHRSSSPG LEAAHAELTE  240
LASKVGNDPS GCSFSLVSLP GIHNNPELLL QHVVDPRGGA SSQQQQLPRQ QSRMSDSSSQ  300
KSYLTSLTAN PEDSGGASGG GGEQQQQQAA TEGGGGKFSP TVAAGSMIMR RSNEATTGAS  360
SHAFVLESSG SRAPALERPT PRRGAIQPQP VVEDSNNAGG GGSPHTSSAA SSQHQGTTTY  420
RSDMQGGASH KSSSSAGQTV TTHHHHVKVE GPLDLNHHGH HGIVMPRSGE LDLNTYDCWE  480
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1971127157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1971127157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1971127157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1971127157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371011.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371012.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371013.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371014.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371015.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371016.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371017.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371018.11e-106protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371019.11e-106protein PHR1-LIKE 3-like isoform X1
TrEMBLA0A2K1KUG61e-105A0A2K1KUG6_PHYPA; Uncharacterized protein
STRINGPP1S25_131V6.11e-106(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-60G2-like family protein