PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0088s0085.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | G2-like | ||||||||
Protein Properties | Length: 482aa MW: 51576.9 Da PI: 8.6738 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.9 | 1.1e-33 | 71 | 125 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQk+Rl Sphfalx0088s0085.1.p 71 KPRLRWTPELHERFVDAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKFRL 125 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.568 | 68 | 128 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-33 | 68 | 126 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.49E-16 | 71 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 71 | 126 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.0E-8 | 73 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.4E-22 | 173 | 220 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MYQIKKYTAA NPAGSLMQQP GLHRPQQSTT SSPAHQQQLQ ERPSLYGRNS NGLLSADAGV 60 MNSSSSAADP KPRLRWTPEL HERFVDAVTQ LGGADKATPK SVMRVMGVKG LTLYHLKSHL 120 QKFRLGKQLH RDTNVHDANK DGPHESSDHM QVTSTTASDS VAALQTKNPQ DNIQITEAIR 180 LQMEVQHRLQ QQLEVQRNLQ LRIEAQGKYL QSILEKAKET LAGHRSSSPG LEAAHAELTE 240 LASKVGNDPS GCSFSLVSLP GIHNNPELLL QHVVDPRGGA SSQQQQLPRQ QSRMSDSSSQ 300 KSYLTSLTAN PEDSGGASGG GGEQQQQQAA TEGGGGKFSP TVAAGSMIMR RSNEATTGAS 360 SHAFVLESSG SRAPALERPT PRRGAIQPQP VVEDSNNAGG GGSPHTSSAA SSQHQGTTTY 420 RSDMQGGASH KSSSSAGQTV TTHHHHVKVE GPLDLNHHGH HGIVMPRSGE LDLNTYDCWE 480 R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-19 | 71 | 127 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 71 | 127 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 71 | 127 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 71 | 127 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371011.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371012.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371013.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371014.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371015.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371016.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371017.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371018.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
Refseq | XP_024371019.1 | 1e-106 | protein PHR1-LIKE 3-like isoform X1 | ||||
TrEMBL | A0A2K1KUG6 | 1e-105 | A0A2K1KUG6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S25_131V6.1 | 1e-106 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-60 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0088s0085.1.p |