PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0088s0074.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 513aa    MW: 54205.6 Da    PI: 6.8361
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0088s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-08369409954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sphfalx0088s0074.1.p 369 ARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 409
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-13361418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-11362414No hitNo description
SuperFamilySSF474591.26E-13364418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5370409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MHERAAVAQA MEGWSKSLVR EWSNNNNNPM GGLESSCSLS SLFFQDSLFQ VGEEIISKGR  60
RSCSSNNSNG GGGGQIRPDQ VLQGGCGGGF ESPMKLAAAQ QSLEVPTSRR RGGGLLLDGV  120
LRSSSSSMVD STSEVLAADD QDTMGSLVMP PHGRPLTSAT SGVGACLQQQ LRAESGPRLQ  180
FCVAPESPAG PLSRGESEES LGGEPFFNAN SASCGRLGSS TMGLKRQLED ADKDAWMDLR  240
AQKSPKLLPQ EEKALVFQDH NHSTVYGSVP SSFGVSYLNP TARSAAIAAA GIPNGSAAQS  300
ASLFAAAAPP GLSHEIELGD GDNLPNKVAS MRAILFRASL PLPTAAEIES SRPKRRNVRI  360
SKDPQSVAAR HRRERISDRI RVLQRLVPGG TKMDTASMLD EAIHYVKFLK LQLQTLEQLG  420
NGSCDLRYNG AIGGQSSLVP PTRPFDLNCA VYNQVTSSCE PGAPLVATVS LSTDSPATSH  480
LSSEVWPSAT SVSRHFGGPG QFSDPLQEQF CH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385802.16e-64uncharacterized protein LOC112287226 isoform X1
RefseqXP_024385803.16e-64uncharacterized protein LOC112287226 isoform X2
TrEMBLA0A2K1JZM51e-62A0A2K1JZM5_PHYPA; Uncharacterized protein
STRINGPP1S67_37V6.12e-63(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-28bHLH family protein