PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0087s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YC | ||||||||
Protein Properties | Length: 336aa MW: 36948.5 Da PI: 6.8007 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179 | 4.3e-56 | 101 | 204 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trt Sphfalx0087s0018.1.p 101 QLQMFWQGQmseIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRT 189 89*****9977889*************************************************************************** PP NF-YC 87 difdflvdivprdel 101 difdflvdivprdel Sphfalx0087s0018.1.p 190 DIFDFLVDIVPRDEL 204 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.39E-35 | 84 | 195 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.2E-38 | 115 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-21 | 123 | 186 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDQQQHQQAM NMMNTQPPQM QYAQSAQQYH HHHQQQQQPQ SSMTAVVAAE GSAAAHQTAA 60 AAGGAGQASG GASSYVPGTS ALAQQQQQLN YQHLQQHHQQ QLQMFWQGQM SEIEQVSDFK 120 NHQLPLARIK KIMKADEDVR MISAEAPVLF AKACEMFILE LTLRSWIHTE ENKRRTLQKN 180 DIAAAITRTD IFDFLVDIVP RDELNKEDGL GIPRGIMPIG SPVSYEGVYY MPQAAGSLQG 240 AGGPVTVVQQ QQPPMGGGVG GGGSPAMMGS GMMLARPTMG VGVDPSSLYH HQQQQQQQQQ 300 RSYIPQQQPM QQMWQQQQQQ LPPHMGHSQS GMPPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-56 | 109 | 201 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 179 | RRTLQKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024395634.1 | 5e-95 | nuclear transcription factor Y subunit C-2-like | ||||
TrEMBL | A0A2K1JHG6 | 1e-93 | A0A2K1JHG6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S409_32V6.1 | 2e-94 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-68 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0087s0018.1.p |