PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0087s0018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YC
Protein Properties Length: 336aa    MW: 36948.5 Da    PI: 6.8007
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0087s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1794.3e-561012041101
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trt
  Sphfalx0087s0018.1.p 101 QLQMFWQGQmseIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRT 189
                           89*****9977889*************************************************************************** PP

                 NF-YC  87 difdflvdivprdel 101
                           difdflvdivprdel
  Sphfalx0087s0018.1.p 190 DIFDFLVDIVPRDEL 204
                           ************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.39E-3584195IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.2E-38115187IPR009072Histone-fold
PfamPF008082.1E-21123186IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDQQQHQQAM NMMNTQPPQM QYAQSAQQYH HHHQQQQQPQ SSMTAVVAAE GSAAAHQTAA  60
AAGGAGQASG GASSYVPGTS ALAQQQQQLN YQHLQQHHQQ QLQMFWQGQM SEIEQVSDFK  120
NHQLPLARIK KIMKADEDVR MISAEAPVLF AKACEMFILE LTLRSWIHTE ENKRRTLQKN  180
DIAAAITRTD IFDFLVDIVP RDELNKEDGL GIPRGIMPIG SPVSYEGVYY MPQAAGSLQG  240
AGGPVTVVQQ QQPPMGGGVG GGGSPAMMGS GMMLARPTMG VGVDPSSLYH HQQQQQQQQQ  300
RSYIPQQQPM QQMWQQQQQQ LPPHMGHSQS GMPPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-56109201395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395634.15e-95nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2K1JHG61e-93A0A2K1JHG6_PHYPA; Uncharacterized protein
STRINGPP1S409_32V6.12e-94(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-68nuclear factor Y, subunit C2