PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0086s0087.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ZF-HD
Protein Properties Length: 625aa    MW: 67758.6 Da    PI: 6.9118
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0086s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer81.59.8e-26237289357
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                           +v+Y+eC+kN Aa+ G  a+DGCgEfmps g+e  ++al CaACgCHRnFHRr +
  Sphfalx0086s0087.1.p 237 GVMYRECQKNLAADRGVCAIDGCGEFMPS-GRE-GKNALACAACGCHRNFHRRVQ 289
                           689*************************9.666.4789***************86 PP
2Homeobox15.52.9e-05557617157
                           TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC...TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl...gLterqVkvWFqNrRakekk 57 
                           +rkRt +t+eq   L+ lF++    ++  +++e + + +   g++ +  k+W +N ++k k+
  Sphfalx0086s0087.1.p 557 KRKRTHITEEQRYKLN-LFAEraGWTVVGQRKETIDAACtdiGIEPKTLKYWIHNSKQKFKR 617
                           79*************7.566437889999******9999999******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.9E-23238289IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-12240287IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-22240287IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.498240288IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.02E-10547617IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-17549617IPR009057Homeodomain-like
PROSITE profilePS500719.167554618IPR001356Homeobox domain
TIGRFAMsTIGR015654.7E-17557613IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MKLQLAADQP PPQHPSLVLQ SFESCAVGGD DQGVNGKFLN EQDVELITGR SGSGTSGVRD  60
QCRTHPNSLS TTASTDLADT TRAAAASPLH LSIAAGSNHI VSKGSSGEAG RSSAAAAAAV  120
HQVHCYGEEE PHTNMEDQRE VLGVESCSRH TKESSEPHII REQEAVDLGG GDIQSRHVRD  180
VMVQANDFQT WRYQQDQQLR TAGAAPAGLA GRRDKLDSEP TAAQCVSLEG AAAAPRGVMY  240
RECQKNLAAD RGVCAIDGCG EFMPSGREGK NALACAACGC HRNFHRRVQL AWDHHDQGGK  300
DDHEDMEQQQ LHEKEGAGEN EHVTSICKIE RVAHELMAAA SRTIPLLSQE LPCLSHRHQN  360
HHAAGRVEDL FIREHNVMAK ISVENLDHIA KLMLSTAEYL TLLQKMSSRT TTMTHMQHIT  420
ASSHEQGIQE DKEFDVEAAS PPSPLPCVAE QGPLSSDVSP VSTVEKRSGP TAAARIMPAM  480
PLYLQPCKTG AGRIGAAQAL SLASHQHQHH HQHHHTTVGN TTQGVSVTGG LSSQRLFLER  540
GSTGGASELA AATRKFKRKR THITEEQRYK LNLFAERAGW TVVGQRKETI DAACTDIGIE  600
PKTLKYWIHN SKQKFKRELS NPSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1556561KRKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-17homeobox protein 21