PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0086s0001.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 701aa MW: 75638.6 Da PI: 6.932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0086s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.3e-09	505	552	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Sphfalx0086s0001.1.p 505 SHSLAERVRREKISERMKYLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 552 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.21E-10	499	556	No hit	No description
SuperFamily	SSF47459	9.95E-17	499	570	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	501	569	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.561	501	551	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-6	505	552	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	507	557	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MAYMASTSDI SLSNHFNKII ARGYMRSSPT HSHVTSPTNS MASYCNSFAN NPSYQSFDLP 60 NIHHGWGGQS TNLHLLAIEN SVQNMTRSHG ANSMEHNSLN SKGVNSILQQ LPCSNSAEIV 120 GATVKDGDWP HVADAKACLY GGSMASLLST SLGSPTHASQ SSRNRVHHMR EGVMTRELID 180 RMGGNKNPNV PSLNVSISQK LGHPMEKILD CGSSQSFDAP ILVGDPCNGG LGALQGVGLA 240 TSHCLTQNFS SNPTFVEQAT NFSSFNGDVD HSQALGQPLS MLTNSPKSHS RLGRGQQAHE 300 SNGKLSRTSS SSIGVKIGGE VVSSFQTCVD GMKVNIVEHD SQATQVCANS DDEKEPCGHE 360 SSLLSLEAIE GARESNVVDG ATGLESSDPG ILLIHGKSDA ALEKKRKSLT QDDKDHASLC 420 QKSTMVDNED TKHKRCKVQD NGQRKTIAKD EVQKPKVEGT YNDNSDNDST QGKLKETNPT 480 KLPHVDISKQ DYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CSKVTGKALM 540 LDEIINYVQS LQRQVEHLSM KLASMPPQMD VVNFDPVITK EMLSQSRGIT SVVDHASFFN 600 HHGKLQQPLS QLGGAIGVGA INLKRSLSCN LETGNNCDTT QLCRSLSSMD GVAFQDSEIQ 660 GSTVWDGDLQ SIVQMGILQC GPTSMMSQGH LPVGHMKVEL *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MAYMASTSDI SLSNHFNKII ARGYMRSSPT HSHVTSPTNS MASYCNSFAN NPSYQSFDLP  60
NIHHGWGGQS TNLHLLAIEN SVQNMTRSHG ANSMEHNSLN SKGVNSILQQ LPCSNSAEIV  120
GATVKDGDWP HVADAKACLY GGSMASLLST SLGSPTHASQ SSRNRVHHMR EGVMTRELID  180
RMGGNKNPNV PSLNVSISQK LGHPMEKILD CGSSQSFDAP ILVGDPCNGG LGALQGVGLA  240
TSHCLTQNFS SNPTFVEQAT NFSSFNGDVD HSQALGQPLS MLTNSPKSHS RLGRGQQAHE  300
SNGKLSRTSS SSIGVKIGGE VVSSFQTCVD GMKVNIVEHD SQATQVCANS DDEKEPCGHE  360
SSLLSLEAIE GARESNVVDG ATGLESSDPG ILLIHGKSDA ALEKKRKSLT QDDKDHASLC  420
QKSTMVDNED TKHKRCKVQD NGQRKTIAKD EVQKPKVEGT YNDNSDNDST QGKLKETNPT  480
KLPHVDISKQ DYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CSKVTGKALM  540
LDEIINYVQS LQRQVEHLSM KLASMPPQMD VVNFDPVITK EMLSQSRGIT SVVDHASFFN  600
HHGKLQQPLS QLGGAIGVGA INLKRSLSCN LETGNNCDTT QLCRSLSSMD GVAFQDSEIQ  660
GSTVWDGDLQ SIVQMGILQC GPTSMMSQGH LPVGHMKVEL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0086s0001.1.p