PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0084s0022.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 851aa    MW: 93242.4 Da    PI: 6.9019
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0084s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.91.8e-30233318187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+l+Li++r++m+ ++r++ lk+plWeev+++++e g++rs+k+Ckek+en++k+ykk+k g+ +r  ++ +++++f++l+a
  Sphfalx0084s0022.1.p 233 RWPRQETLVLIKIRSKMDASFRDSGLKGPLWEEVARRLAEFGYNRSAKKCKEKFENIHKYYKKTKSGQAGR-RQDGKNYRFFSELDA 318
                           8********************************************************************98.77888*******985 PP
2trihelix101.47e-32620704186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+  ev+aLi++r++me r++++  k+plWee+s  m+  g+ r++k+Ckekwen+nk+++kike++kkr +e+s+tcpyf+ql+
  Sphfalx0084s0022.1.p 620 RWPTPEVHALIRLRSSMEPRFQETGPKGPLWEEISTGMSCLGYVRNAKRCKEKWENVNKYFRKIKESSKKR-PENSKTCPYFHQLD 704
                           8*********************************************************************8.9999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.317226290IPR017877Myb-like domain
SMARTSM007175.2E-4230292IPR001005SANT/Myb domain
CDDcd122032.99E-30232297No hitNo description
PfamPF138372.8E-21232319No hitNo description
SMARTSM007171.1617679IPR001005SANT/Myb domain
PfamPF138371.0E-20619705No hitNo description
CDDcd122031.58E-31619684No hitNo description
PROSITE profilePS500906.458620677IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MQSPGQYGVN EVPQFLLGMR QHPPGPHQLF SLSHDSSLSP SSAHSHPSHQ QQHIYYHHHQ  60
QLQLQQQKEQ QQHQQHQHQL HASHSPHQQQ HQHAQHQQHQ QQLQQQQQMV QQLGLGGGGG  120
GGGGPVPDSP EAATAGAPSP GPMATRPLAA SFSKQLTRAA AGAVSARDLV LGHEPAPLLH  180
ITTTATDVVD DDDDDDPALL GTELVAAAGG GDDGGGRSTP PLGDGSSAAA GNRWPRQETL  240
VLIKIRSKMD ASFRDSGLKG PLWEEVARRL AEFGYNRSAK KCKEKFENIH KYYKKTKSGQ  300
AGRRQDGKNY RFFSELDALY GGDHHQHRNK AVDHHHHHDA GAAAAILQST QSAGGGSGLH  360
QAAGIADHAV GLFRAAVENH ATSTAAAAAD SDSSEDNYDH GPQLGRESDL LDDDDDDGGG  420
GGDAERSKKR KLMMRQQQQQ SAGGVGRPHR SNNSTSRKVL FFESLMKKLM DKQDAMQRKF  480
LESIERREQE RLVREEAWKR QEMAHLARDH ELRIQQHNLA VSRDAALVAA LQKVTGHTLQ  540
LPQLPPPPPP PPALPLSPLA PPPPLPPSPF QAIPNTHVSQ PSRAHHIQHQ KQQQQQLHQE  600
DEPENLDHHG SSFDLHSSKR WPTPEVHALI RLRSSMEPRF QETGPKGPLW EEISTGMSCL  660
GYVRNAKRCK EKWENVNKYF RKIKESSKKR PENSKTCPYF HQLDTLYHNG TLGTSSPSMS  720
KQQPGSKQVD DEQQQSQGDH HLLQQLPDHH HQQHGSGDNC RKDDDDDDDD DDEDDPTGGL  780
VVHREAGIIV GMQQQQQQLP AAGDGVAIAG GPPGSTSNGT TAIHFFSNTE NGSNGDTDHG  840
GVMKGMATNR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-41Trihelix family protein