PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0084s0021.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 763aa    MW: 85475.1 Da    PI: 6.9228
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0084s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.33.3e-31245329187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+l+Li++r+em++++r++ lk+plWe+v++k++e g++rs+k+Ckek+en++k+ykk+k+g+ +r  ++ +++++f++l+a
  Sphfalx0084s0021.1.p 245 RWPRQETLLLIKIRSEMDSNFRDSGLKGPLWEDVARKLSELGYNRSAKKCKEKFENIHKYYKKTKDGKAGR--QDGKNYRFFSELDA 329
                           8********************************************************************97..66678******985 PP
2trihelix104.76.8e-33594678186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+  ev+aLi++r eme+r++++  k+plWee+s +m++ g++r+pk+Ckekwen+nk+y+k ke++kkr +e+s+tcpyf+ql+
  Sphfalx0084s0021.1.p 594 RWPTPEVHALIRLRMEMESRFQETGPKGPLWEEISTAMASMGYTRNPKRCKEKWENVNKYYRKAKESNKKR-AENSKTCPYFQQLD 678
                           8*********************************************************************8.78889*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166238302IPR017877Myb-like domain
SMARTSM007171.5E-4242304IPR001005SANT/Myb domain
CDDcd122034.47E-30244309No hitNo description
PfamPF138376.5E-23244330No hitNo description
PROSITE profilePS500907.224587651IPR017877Myb-like domain
SMARTSM007170.016591653IPR001005SANT/Myb domain
PfamPF138374.9E-23593679No hitNo description
CDDcd122031.06E-29593658No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MQSAGQYGVN EVPQFVVGGS QHPSPHLFSL VHDMSLSPAS SGHTHPGHLN HHQQQQHLYS  60
HLNQVQQQQQ QQPSSKEAPH PHLNLHHHHP HQQQQQTSHS PHQQRQQHQH VQQQQHHQHM  120
QQQVVQQQQV QQQTLQQKHH HHHHQQQVTV QHQQNHMVNE LGLGGPESSE EAAAPGSSVV  180
SRPSPSMYTK QMSAVLARDL ALGHDETSLQ GRVDPDEEEH GGIEGGGEEE GLLLRSTQEG  240
SGGNRWPRQE TLLLIKIRSE MDSNFRDSGL KGPLWEDVAR KLSELGYNRS AKKCKEKFEN  300
IHKYYKKTKD GKAGRQDGKN YRFFSELDAL YAGRNTSTTH AADPTAAAAA LMLPGLAAAT  360
HDGFMRNAGL SPAAFRAAAE NAGGLGFAAV SEGSSEENDH EEQPEPDLDE HGNNNNNNTS  420
SKKRKRKESE TGIPAAARTT TNSGSSSKKV MFLESLVNKL MDQQESMQRK FLESMEKREQ  480
ERIVREEAWK TQEMERLNRE HELRTQEHTL ALSRDAALVA VLQKLTGETL QLPPPPSPPR  540
PSSSLHATAT TQPAHNQNRS HHQQELLLQE EGEKVLNQGS SPFDPHSSNS SSKRWPTPEV  600
HALIRLRMEM ESRFQETGPK GPLWEEISTA MASMGYTRNP KRCKEKWENV NKYYRKAKES  660
NKKRAENSKT CPYFQQLDTL YNPAAAAAGA QIAGPRNPAS KPADHEQTLE ELQSEMPDHL  720
QQEHHLMRDD DDDDDQSAAK QLVQGDAVQK ELGGPLKKTT EL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421426KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402443.11e-159trihelix transcription factor GTL1-like
TrEMBLA9RNY91e-164A9RNY9_PHYPA; Predicted protein (Fragment)
STRINGPP1S19_341V6.11e-158(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-54Trihelix family protein