PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0083s0022.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 690aa    MW: 75856.4 Da    PI: 7.6743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0083s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.2e-15472518455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h  +ErrRR+++N++f +Lr l+P       +K++Ka+iL  A++Y+k+Lq
  Sphfalx0083s0022.1.p 472 SHVLAERRRREKLNDRFITLRALVPFV-----TKMDKASILGDAIDYVKELQ 518
                           7999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4923203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.517468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-12472518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-21472535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.37E-16472522No hitNo description
SuperFamilySSF474595.76E-20472535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-18474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAGLKFMAPD RMKEEKTQLS FCHKLQAATR SVQWTYAIFW EPSPKQQALV WGNGYYNGSI  60
KTRRTVHAEE LSPEEFGLQR TQQLRDLFAT LSVAGTGHEL ARKPSSLNPE DLAETEWFYL  120
VCMSCSFASG AGLPGRTIGE GRYVWLYGAN EANTKVFNRA LLAKTACIQT VVCIPLADGV  180
LELGTTDLVK EDPTLVQHIL SFFVDHMKSV STEQSASSHQ GAEKSELLER QGTTGWLSSP  240
VQNSPSKSSA QETPVLGFTQ ESDAKAPKSS KRATGLQKES QHLLSDEAQG LSLRYSLHSS  300
QPWPPPPKQR APSSQAADHL NAEARAPRDM LMLGLRQPND PSLAPDSTLS SLPLPRKQVQ  360
RGSSADQSHP ALTVNTEKPN EKPEGAPKAP IPSAFVHWED GLPPVKKYQQ PGNHQRLLKE  420
AMFHITKLCS TRGDDSKEGE SGFASLDTEQ EERRSAGGSR KGGGSAEEVN GSHVLAERRR  480
REKLNDRFIT LRALVPFVTK MDKASILGDA IDYVKELQRR IKDLEAQNNQ LHEVVEARTA  540
KRPINMNKSE MYIDNQPKMQ FNDKLSTIEQ TAKAGDPTST NSSLRENGQE VPGDADVQVS  600
IEGDEAILNL KCPWRKNLLL DILQTLSNLQ FDVFAVQAST GNDHLAASLK AKMRNDATLA  660
RPNVLAVRET LQHIVGGVGI NRNIAPSPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-202419951227Transcription factor MYC3
4ywc_A1e-202419951227Transcription factor MYC3
4ywc_B1e-202419951227Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1476481ERRRRE
2477482RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-67bHLH family protein