PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0083s0005.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 716aa    MW: 78886.2 Da    PI: 5.2918
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0083s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20442493155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr+++ +g+++AeIrd       + +r++lg+f+taeeAa+a++aa+ k++g
  Sphfalx0083s0005.1.p 442 PHYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFDTAEEAAEAYDAAAFKMRG 493
                           68********.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-15442493IPR001471AP2/ERF domain
CDDcd000183.94E-18442501No hitNo description
SuperFamilySSF541712.03E-22443502IPR016177DNA-binding domain
PROSITE profilePS5103224.263443501IPR001471AP2/ERF domain
SMARTSM003802.2E-36443507IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-30443502IPR001471AP2/ERF domain
PRINTSPR003671.7E-10444455IPR001471AP2/ERF domain
PRINTSPR003671.7E-10467483IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MNFDTFGFRR RSSSQNDRQN WADQMWESYK EQEEFGKDVL KQFQSHLSKI PLPVLDDALA  60
PAAASRTGAA AEAPPVTSRS FGSTVGIGNQ MVIREETSWE RNPFAEVNTN SDEDKLLLND  120
ILPPGNGHQI KAWMLAKRVR DSLVSSFAKS FRGKVEQALE TSCLQQQRQQ AAGSNTKQQQ  180
QPPCPRFTNS QIGVEGAASS PISYVPNLLP AQESCWEDDQ FLTDWSYKDE VQISTSLRKL  240
MEEEEEEGSA ADAKPELIQT RSCTEVQNQL PLNENDSEET ILVGMLKVAA TTEAPQALVS  300
SAHTVPAPVQ QQQSTKLQEP KAAIRSISRR CSAFPEATAM SLMSKHQAVH PFLQPSMISN  360
WPGIDPQQQQ QKLQLAQKQN QKMELKGLHE HIKSANKAPE PVHLERQKLD VDHHTGHVLG  420
GGGIAANPPQ KVKPRAPQQQ QPHYRGVRRR PWGKFAAEIR DSARQGARVW LGTFDTAEEA  480
AEAYDAAAFK MRGCRALLNF PLRASSLAQA SSSPTPNDNN NNNNTTSSGQ AITIKSECST  540
NISTPTTKLE SRSTLATYKT PTIAKSVQGG DQMVATNSKE LNGDELLDLL HQSRSDTTTP  600
KKRSRDQPSN NGTGLSSLES DCLELEPLPC KKKTMTSNSC MEISNELDLS KVETIKETLE  660
LQDLGAEYLE QLLMSSSCCE PEIEMSDIDL LSAITNSSIA NCTVDNFEIF PDLLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-30443503262ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-30443506568ATERF1
3gcc_A4e-30443506568ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.19e-24ethylene responsive element binding factor 2