PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0081s0108.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 838aa MW: 88334.3 Da PI: 5.6396 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 3.9e-08 | 643 | 689 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sL Sphfalx0081s0108.1.p 643 SHSLAERVRREKISERMKYLQELVPGC----SKVTGKALMLDEIINYVQSL 689 8*************************9....5569**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.00E-9 | 637 | 694 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-16 | 637 | 708 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 639 | 707 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.535 | 639 | 689 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-5 | 643 | 689 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-8 | 645 | 695 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MAYMAAAAAA AVREPAASYY VHGPGQLRRS ISIPASTYSW VILQESRAAA TSAGTGHDDD 60 YSSLAACSSS FVDDSDKVGA ASEIISSVFD CSASRPSSAS LQQQQLAGSM TSSSCSASEL 120 LLPGSTTRIR GDWNQLLGAG DSSCCNRVRN PTNFSSTVLS SAQVLNSVVD GIEGFGAQGQ 180 YCSTSRLGGA IDSLTVAAGG GGAGHSSRSR WSEELEQQPC GGISVEPATK GGLVTLQQLA 240 GVVEGVATCS FDSHCYCLDQ FSSDPAFAER AAKFSSFSNN NNVDDGGTTL YSQMINSHHP 300 LAALPFRQTT FDCIIGKLGD QRVAAGTSSA QLRTQPLLHS GRKISRTSSC PPAAAAAAAT 360 SAAGKLINLA AAAVVAPKLG TAANDATHEE EPRSGHTQNM EVEELVAAST AVDQPELVKE 420 PAALEASPQG FMRSKEVGID GVTRSEAAAA DFSCCTPAAT AAAEVGRSSA RESSDDRTRE 480 NKRKFVDIHS NAKETNLINS KLVDRQSDQD PRHDPRAKRY KGGSGATKLA AASADQEEDD 540 QQRQLMKSLK AGADQARISS SRETSSGDDD SSSCPMISST TTAAAAAAGK LTTMQQKENE 600 KPSCILMQTS EPPCTTSSAA AAASNKKVDY VHVRARRGQA TDSHSLAERV RREKISERMK 660 YLQELVPGCS KVTGKALMLD EIINYVQSLR RQVEFLSMKL ASVNSQLDFN LDSILNKEML 720 WSQDSAVLLP APSLSYGLHL PPLIQQHLAT DGPDFQSLAT IDTLLCRRTM SAPISVPCAP 780 NADAFGDDPS TQMSTEWDGE LQTMFQMGFG QVSRATPLME GSFNTCHLPA GHMKVEL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 4e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0081s0108.1.p |