PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0081s0063.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 883aa    MW: 96344.6 Da    PI: 6.7561
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0081s0063.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.7e-17664357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  Sphfalx0081s0063.3.p  6 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIREApvlaNIEPKQIKVWFQNRRCREKQ 64
                          5678*****************************99999*******************97 PP
2START169.22.7e-532164172203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           lae++++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W +++++ +tl +is+g  
  Sphfalx0081s0063.3.p 216 LAEDTLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCAGIAARACGLVGLEPT-KVAEVLKDRPSWLRDCRRLQTLGAISTGkg 303
                           689999****************************************************.9999999999******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                           g+++l +++++a+++l+p Rdf ++Ry+  l++g +vi+++S+   q+p   +s+vRae+lpSg+li+p+++g++ +++v+h dl+ ++
  Sphfalx0081s0063.3.p 304 GTIELLYTQMYAPTTLAPpRDFCTLRYTTILEDGNLVICERSLAGSQEPI--PSFVRAEMLPSGFLIRPCEGGGCIIHVVDHYDLEPWS 390
                           ************************************************85..8************************************ PP

                           XHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 177 phwllrslvksglaegaktwvatlqrq 203
                           ++++lr+l++s +a +++t+ ++l+++
  Sphfalx0081s0063.3.p 391 IPEVLRPLYESAAALAQRTTIRALRYL 417
                           **********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726165IPR001356Homeobox domain
SMARTSM003891.1E-13369IPR001356Homeobox domain
SuperFamilySSF466898.55E-16567IPR009057Homeodomain-like
CDDcd000861.33E-15666No hitNo description
PfamPF000467.6E-15764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-18864IPR009057Homeodomain-like
CDDcd146860.002035894No hitNo description
PROSITE profilePS5084826.539206415IPR002913START domain
CDDcd088754.81E-80211421No hitNo description
SMARTSM002344.0E-42215420IPR002913START domain
SuperFamilySSF559611.21E-37216422No hitNo description
PfamPF018521.9E-50216417IPR002913START domain
Gene3DG3DSA:3.30.530.206.2E-23216415IPR023393START-like domain
PfamPF086707.2E-40738880IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MDASGKYVRY TNEQVEALER VYHECPKPSS IRRQQLIREA PVLANIEPKQ IKVWFQNRRC  60
REKQRKESTR LVSVNAKLTA LNRLLMEENE RLARHTSQLT LDNHMLRQQL NELPGGPAPP  120
PGSRRRLPNN QEVPPLHGLK EERMHGGNLF SALNGGGVGG GDKISSRGDL SLQVPGRNGM  180
ASTDTSSDSV ITVGLPQNPT PQHSPRDVNS AGLLALAEDT LTEFLAKATG TAVDWIQLPG  240
MKPGPDAIGI IAISHGCAGI AARACGLVGL EPTKVAEVLK DRPSWLRDCR RLQTLGAIST  300
GKGGTIELLY TQMYAPTTLA PPRDFCTLRY TTILEDGNLV ICERSLAGSQ EPIPSFVRAE  360
MLPSGFLIRP CEGGGCIIHV VDHYDLEPWS IPEVLRPLYE SAAALAQRTT IRALRYLRRL  420
AQEESGEIGL RNGQQHPGAL WTLSLRLARG FNEAVNTFTD DGWTTLGTDG MDDVSIVINP  480
TPTMKSTGGQ NASDRVLFAL GGGILCAKAS MLLQNVPPAL LIRSLREHRS EWANFDIDAN  540
TAAMFRNNLH GGISASRAAS APLPFAHSLE QEEFLEVVKL EGGSILSRDS FLVQLCSGID  600
ENAVGACAQL VFAPVDVAIS DDVPLLPSGF RVIPLDSNTG LSRTLNLAAT LEGGSDGMRT  660
TANGVLVGSP SSHSRSVLTI AFQFAYEAHN RDSCAVMARE YVRTVVASVQ RIAIALTPSH  720
LAPHTDPRHL PVTPNSLLAR RIVESYRVNL GMDLTRTTDT GNDDALFKDF WQHNDAIVCC  780
TWKGLPEFMF ANRAGLEMFE TTAGALQDLS WENTLDENSK KFPYTDFTQV LQQGSAYLPP  840
GVRISHRGRT VTYERALAWK VTDVAESPLC VAFLFMNWTF LT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305580.0KU530558.1 Sphagnum sp. SB-2016 C3HDZ4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373354.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373355.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373356.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0JAI10.0A0A0Y0JAI1_9BRYO; C3HDZ4 (Fragment)
STRINGPP1S188_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]