PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0081s0063.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 884aa    MW: 96500.8 Da    PI: 6.8441
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0081s0063.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.7e-17664357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  Sphfalx0081s0063.2.p  6 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIREApvlaNIEPKQIKVWFQNRRCREKQ 64
                          5678*****************************99999*******************97 PP
2START169.22.7e-532174182203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           lae++++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W +++++ +tl +is+g  
  Sphfalx0081s0063.2.p 217 LAEDTLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCAGIAARACGLVGLEPT-KVAEVLKDRPSWLRDCRRLQTLGAISTGkg 304
                           689999****************************************************.9999999999******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                           g+++l +++++a+++l+p Rdf ++Ry+  l++g +vi+++S+   q+p   +s+vRae+lpSg+li+p+++g++ +++v+h dl+ ++
  Sphfalx0081s0063.2.p 305 GTIELLYTQMYAPTTLAPpRDFCTLRYTTILEDGNLVICERSLAGSQEPI--PSFVRAEMLPSGFLIRPCEGGGCIIHVVDHYDLEPWS 391
                           ************************************************85..8************************************ PP

                           XHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 177 phwllrslvksglaegaktwvatlqrq 203
                           ++++lr+l++s +a +++t+ ++l+++
  Sphfalx0081s0063.2.p 392 IPEVLRPLYESAAALAQRTTIRALRYL 418
                           **********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726165IPR001356Homeobox domain
SMARTSM003891.1E-13369IPR001356Homeobox domain
SuperFamilySSF466898.55E-16567IPR009057Homeodomain-like
CDDcd000861.52E-15666No hitNo description
PfamPF000467.6E-15764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-18864IPR009057Homeodomain-like
CDDcd146860.002135894No hitNo description
PROSITE profilePS5084826.025207416IPR002913START domain
CDDcd088751.12E-79213422No hitNo description
SMARTSM002344.0E-42216421IPR002913START domain
Gene3DG3DSA:3.30.530.205.7E-23216416IPR023393START-like domain
PfamPF018521.9E-50217418IPR002913START domain
SuperFamilySSF559611.21E-37217423No hitNo description
PfamPF086707.2E-40739881IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MDASGKYVRY TNEQVEALER VYHECPKPSS IRRQQLIREA PVLANIEPKQ IKVWFQNRRC  60
REKQRKESTR LVSVNAKLTA LNRLLMEENE RLARHTSQLT LDNHMLRQQL NELPGGPAPP  120
PGSRRRLPNN QEVPPLHGLK EERMHGGNLF SALNGGGVGG GDKISSRGDL SLQVPGRNGM  180
ASTDTSSDSV ITVGLPQNPT PQHSPRDVNS AGRLLALAED TLTEFLAKAT GTAVDWIQLP  240
GMKPGPDAIG IIAISHGCAG IAARACGLVG LEPTKVAEVL KDRPSWLRDC RRLQTLGAIS  300
TGKGGTIELL YTQMYAPTTL APPRDFCTLR YTTILEDGNL VICERSLAGS QEPIPSFVRA  360
EMLPSGFLIR PCEGGGCIIH VVDHYDLEPW SIPEVLRPLY ESAAALAQRT TIRALRYLRR  420
LAQEESGEIG LRNGQQHPGA LWTLSLRLAR GFNEAVNTFT DDGWTTLGTD GMDDVSIVIN  480
PTPTMKSTGG QNASDRVLFA LGGGILCAKA SMLLQNVPPA LLIRSLREHR SEWANFDIDA  540
NTAAMFRNNL HGGISASRAA SAPLPFAHSL EQEEFLEVVK LEGGSILSRD SFLVQLCSGI  600
DENAVGACAQ LVFAPVDVAI SDDVPLLPSG FRVIPLDSNT GLSRTLNLAA TLEGGSDGMR  660
TTANGVLVGS PSSHSRSVLT IAFQFAYEAH NRDSCAVMAR EYVRTVVASV QRIAIALTPS  720
HLAPHTDPRH LPVTPNSLLA RRIVESYRVN LGMDLTRTTD TGNDDALFKD FWQHNDAIVC  780
CTWKGLPEFM FANRAGLEMF ETTAGALQDL SWENTLDENS KKFPYTDFTQ VLQQGSAYLP  840
PGVRISHRGR TVTYERALAW KVTDVAESPL CVAFLFMNWT FLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305580.0KU530558.1 Sphagnum sp. SB-2016 C3HDZ4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373354.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373355.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024373356.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0JAI10.0A0A0Y0JAI1_9BRYO; C3HDZ4 (Fragment)
STRINGPP1S188_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]