PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0081s0063.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 885aa    MW: 96628.9 Da    PI: 6.8441
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0081s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.7e-17664357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  Sphfalx0081s0063.1.p  6 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIREApvlaNIEPKQIKVWFQNRRCREKQ 64
                          5678*****************************99999*******************97 PP
2START169.22.7e-532184192203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           lae++++e+++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W +++++ +tl +is+g  
  Sphfalx0081s0063.1.p 218 LAEDTLTEFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCAGIAARACGLVGLEPT-KVAEVLKDRPSWLRDCRRLQTLGAISTGkg 305
                           689999****************************************************.9999999999******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                           g+++l +++++a+++l+p Rdf ++Ry+  l++g +vi+++S+   q+p   +s+vRae+lpSg+li+p+++g++ +++v+h dl+ ++
  Sphfalx0081s0063.1.p 306 GTIELLYTQMYAPTTLAPpRDFCTLRYTTILEDGNLVICERSLAGSQEPI--PSFVRAEMLPSGFLIRPCEGGGCIIHVVDHYDLEPWS 392
                           ************************************************85..8************************************ PP

                           XHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 177 phwllrslvksglaegaktwvatlqrq 203
                           ++++lr+l++s +a +++t+ ++l+++
  Sphfalx0081s0063.1.p 393 IPEVLRPLYESAAALAQRTTIRALRYL 419
                           **********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726165IPR001356Homeobox domain
SMARTSM003891.1E-13369IPR001356Homeobox domain
SuperFamilySSF466898.55E-16567IPR009057Homeodomain-like
CDDcd000861.61E-15666No hitNo description
PfamPF000467.6E-15764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-18864IPR009057Homeodomain-like
CDDcd146860.002275894No hitNo description
PROSITE profilePS5084826.025208417IPR002913START domain
CDDcd088751.12E-79214423No hitNo description
SMARTSM002344.0E-42217422IPR002913START domain
Gene3DG3DSA:3.30.530.205.7E-23217417IPR023393START-like domain
PfamPF018521.9E-50218419IPR002913START domain
SuperFamilySSF559611.21E-37218424No hitNo description
PfamPF086707.2E-40740882IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MDASGKYVRY TNEQVEALER VYHECPKPSS IRRQQLIREA PVLANIEPKQ IKVWFQNRRC  60
REKQRKESTR LVSVNAKLTA LNRLLMEENE RLARHTSQLT LDNHMLRQQL NELPGGPAPP  120
PGSRRRLPNN QQEVPPLHGL KEERMHGGNL FSALNGGGVG GGDKISSRGD LSLQVPGRNG  180
MASTDTSSDS VITVGLPQNP TPQHSPRDVN SAGRLLALAE DTLTEFLAKA TGTAVDWIQL  240
PGMKPGPDAI GIIAISHGCA GIAARACGLV GLEPTKVAEV LKDRPSWLRD CRRLQTLGAI  300
STGKGGTIEL LYTQMYAPTT LAPPRDFCTL RYTTILEDGN LVICERSLAG SQEPIPSFVR  360
AEMLPSGFLI RPCEGGGCII HVVDHYDLEP WSIPEVLRPL YESAAALAQR TTIRALRYLR  420
RLAQEESGEI GLRNGQQHPG ALWTLSLRLA RGFNEAVNTF TDDGWTTLGT DGMDDVSIVI  480
NPTPTMKSTG GQNASDRVLF ALGGGILCAK ASMLLQNVPP ALLIRSLREH RSEWANFDID  540
ANTAAMFRNN LHGGISASRA ASAPLPFAHS LEQEEFLEVV KLEGGSILSR DSFLVQLCSG  600
IDENAVGACA QLVFAPVDVA ISDDVPLLPS GFRVIPLDSN TGLSRTLNLA ATLEGGSDGM  660
RTTANGVLVG SPSSHSRSVL TIAFQFAYEA HNRDSCAVMA REYVRTVVAS VQRIAIALTP  720
SHLAPHTDPR HLPVTPNSLL ARRIVESYRV NLGMDLTRTT DTGNDDALFK DFWQHNDAIV  780
CCTWKGLPEF MFANRAGLEM FETTAGALQD LSWENTLDEN SKKFPYTDFT QVLQQGSAYL  840
PPGVRISHRG RTVTYERALA WKVTDVAESP LCVAFLFMNW TFLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305580.0KU530558.1 Sphagnum sp. SB-2016 C3HDZ4 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373357.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0JAI10.0A0A0Y0JAI1_9BRYO; C3HDZ4 (Fragment)
STRINGPP1S188_95V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]