PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0081s0036.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 361aa MW: 38792.6 Da PI: 4.1305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0081s0036.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	335	355	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ykC+dC k F + L++H Sphfalx0081s0036.2.p 335 YKCKDCEKNFVTETALTQHSA 355 9******************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.949	335	360	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	337	358	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEFWGIEVPA GKPVTCVPGE GMYLHVSQAA LGEGKGKSEG NKAVLSVEVD ATKVVLGTLY 60 QGKCDQISLD LVFDRDFVVS HTGSSVSMYL CGYRTEAPQD EFDSEEGMTD EDEDEDEEEP 120 VQAAVPLIKA NGDAPGGKKA VKPETAKSVI TPEAAAAAGK AAAAPVLKKL EQQQTKPKGP 180 VAVLPEDDED EEDDEDDEED EDDDEMDEDE FDEDDEDDDE DDENDEEDEE DDEDELELEP 240 AKLGAKRPAA GLPKVVDKKA KTETPNKPAS VVKKAKEVAT PVAKTPKKEV AKSARKEEIT 300 PKEKNAKTPS DKTPKGAVGA TPTATPASTK KLGEYKCKDC EKNFVTETAL TQHSAAKHKK 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEFWGIEVPA GKPVTCVPGE GMYLHVSQAA LGEGKGKSEG NKAVLSVEVD ATKVVLGTLY  60
QGKCDQISLD LVFDRDFVVS HTGSSVSMYL CGYRTEAPQD EFDSEEGMTD EDEDEDEEEP  120
VQAAVPLIKA NGDAPGGKKA VKPETAKSVI TPEAAAAAGK AAAAPVLKKL EQQQTKPKGP  180
VAVLPEDDED EEDDEDDEED EDDDEMDEDE FDEDDEDDDE DDENDEEDEE DDEDELELEP  240
AKLGAKRPAA GLPKVVDKKA KTETPNKPAS VVKKAKEVAT PVAKTPKKEV AKSARKEEIT  300
PKEKNAKTPS DKTPKGAVGA TPTATPASTK KLGEYKCKDC EKNFVTETAL TQHSAAKHKK  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-25	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Sphfalx0081s0036.2.p