PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0081s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 385aa MW: 41552.3 Da PI: 4.0141 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 359 | 379 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ykC+dC k F + L++H Sphfalx0081s0036.1.p 359 YKCKDCEKNFVTETALTQHSA 379 9******************66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03066 | 9.4E-7 | 22 | 207 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 359 | 384 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 361 | 382 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEFWGIEVPA GKPVTCVPGE GMYLHVSQAA LGEGKGKSEG NKAVLSVEVD ATKVVLGTLY 60 QGKCDQISLD LVFDRDFVVS HTGSSVSMYL CGYRTEAPQD EFDSEEGMTD EDEDEDEEEP 120 VQAAVPLIKA NGDAPGGKKA VKPETAKSVI TPEAAAAAGK AAAAPVLKKL EQQQTKPKGP 180 VAVLPEDDED EEDDEDDEED EDDDEEEEPN VGPFVMDMDS DSDDEEFDEM DEDEFDEDDE 240 DDDEDDENDE EDEEDDEDEL ELEPAKLGAK RPAAGLPKVV DKKAKTETPN KPASVVKKAK 300 EVATPVAKTP KKEVAKSARK EEITPKEKNA KTPSDKTPKG AVGATPTATP ASTKKLGEYK 360 CKDCEKNFVT ETALTQHSAA KHKK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 2e-25 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0081s0036.1.p |