PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0081s0029.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 546aa    MW: 59693.9 Da    PI: 6.1494
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0081s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06748540
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                           C+ ++e +++l+C+ ++  lC  C  + H g       H+++
  Sphfalx0081s0029.1.p  7 ACDFCGESRATLYCRADSARLCLLCDRHVH-GanalsrrHQRT 48
                          6*****************************.546777778765 PP
2CCT62.81e-21488531144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R+ a+lRYkeK+k RkF+KkirYesRKa+A+ R+RvKGrFvk+ 
  Sphfalx0081s0029.1.p 488 RDLAMLRYKEKKKIRKFDKKIRYESRKARADIRKRVKGRFVKAG 531
                           7889*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-13350IPR000315B-box-type zinc finger
PROSITE profilePS5011910.011350IPR000315B-box-type zinc finger
CDDcd000213.82E-8850No hitNo description
PfamPF062033.6E-16488530IPR010402CCT domain
PROSITE profilePS5101714.971488530IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEVGSSACDF CGESRATLYC RADSARLCLL CDRHVHGANA LSRRHQRTLL CDACNLRPAA  60
FRCTVENVTL CHSCDWDSHG GSNSSSCSPA VAAALQQHMR HPFDCFSGCP SAQELGSLWG  120
CAETSMPTGA VMMGKEGGGH GSKQQQQWSR EALVQQLQKL GVLDPQMQQA PPPAMLLQTS  180
KKHPISFPSE PPLQQLSSTL TTFQGYQKQE LLQQQQQPNT PSNQLLLSHH QQQTASLQNS  240
QQQTSQVSQL LLATCETLQL KSEDCNDNLM MMQGGDAFWR MNMSQQLWGE NMQDLGICKG  300
EGEVGGLCEG GFSMADVDLS FDNYEDIFSS TQDLSSSSFN DIHAGCTSLG QDSVTEEKNQ  360
CVANMQSITQ SKLLESTNGV MNGAELQVYE EEGLAGQGPG PPPSPPEISE IGKMMSATGL  420
NGCPDMEMQQ LVQQRRPTGS SLSRSLSGVS GDSSDYHECT AASSMLINTD SSWVPTSPDR  480
VALTHQARDL AMLRYKEKKK IRKFDKKIRY ESRKARADIR KRVKGRFVKA GQAYDYDPTG  540
PTRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-35B-box type zinc finger protein with CCT domain