PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0080s0048.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

WRKY

Protein Properties

Length: 973aa MW: 103524 Da PI: 5.8729

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0080s0048.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.4e-30	445	504	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh Sphfalx0080s0048.2.p 445 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILITTYEGNHNHA 504 58*************************99**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-32	430	506	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-27	438	506	IPR003657	WRKY domain
PROSITE profile	PS50811	29.172	440	506	IPR003657	WRKY domain
SMART	SM00774	1.9E-36	445	505	IPR003657	WRKY domain
Pfam	PF03106	2.2E-26	446	503	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MGSASLASIT ADGSETDTGG EWDNTETTTS SQRPATKSSS TSSAGREDRV AQIDLSVMLA 60 EDDQEMSIEE EDDEMQQVVM TTSAAAASRD CLSMIKAGLQ DSTARSSWEI DEEEASSPHR 120 APPSAGDEQQ QHQQQPAAAP VDHRASIRRW PGNENSSLFM HNTSASEDRS TVEDETSRRP 180 STTSPKQRSR GSALALQLQT ELRTAHSQMT RLSEENERLR RQLAQVVTTL NQNPNNMEVH 240 DSPADQEDLA RSRTSPKSNL RGLGKGIGKR QADENSSSPD RACVTAAPGL SGEDQVTVSS 300 PSKQQQKAAS SSPAPDEEQD GMQQVQEDNI PRSSSALSDE TRHESAPAAF NHRSSTSPPR 360 RDVDDKTGLD QSCAPTADHH QQKEEENNTR PPKKMQKTAA AAATSPSIKP VQHYNPHKEA 420 KMSEPPTVVR KARVSVRSRC ETPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAAGCPVR 480 KQVQRCAEDM SILITTYEGN HNHAIPPAAA AMASTTSAAA SMLLAGSTAS SCDDYHAVAA 540 RMLLQGASTS SAGGFPNNFS FATPGAAGLV QQAGGSCPTA PISGSIVAST SFPTIMLDLT 600 KEPTTQLSLQ FGSGSGPPAA TKAQSYVAHP FEAAAAASTT VAQYSARINA PVQTFPRASS 660 TQLAPLFLSN GNPNYRPTGM MQTATTTTST PDRQLEPGST ASCSSFQEHS YNTVVTRHEQ 720 PHAASAVLHQ ETVTALRTSS LAAASYNPSG SSQQLVAAGG AIDLTAPTTD QAAAAAAASK 780 SIADSISAIT ANPNFTAALA SAITSLLQSS TNNLTFQTHH HQQRQQQQQQ QQQQRASNQT 840 AAHDGSGAAP IQPQLVSYPG ELLALAPAAV QLRSTGTPPV MEFCDHSKDL YSSASSIEEE 900 EAASMLLLQQ QVAMLQQQQQ QQQQEHQESP AFTISRLLSS ALQFSMSTQE QGPQTTQLNS 960 AATMDHHPWT QN*

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MGSASLASIT ADGSETDTGG EWDNTETTTS SQRPATKSSS TSSAGREDRV AQIDLSVMLA  60
EDDQEMSIEE EDDEMQQVVM TTSAAAASRD CLSMIKAGLQ DSTARSSWEI DEEEASSPHR  120
APPSAGDEQQ QHQQQPAAAP VDHRASIRRW PGNENSSLFM HNTSASEDRS TVEDETSRRP  180
STTSPKQRSR GSALALQLQT ELRTAHSQMT RLSEENERLR RQLAQVVTTL NQNPNNMEVH  240
DSPADQEDLA RSRTSPKSNL RGLGKGIGKR QADENSSSPD RACVTAAPGL SGEDQVTVSS  300
PSKQQQKAAS SSPAPDEEQD GMQQVQEDNI PRSSSALSDE TRHESAPAAF NHRSSTSPPR  360
RDVDDKTGLD QSCAPTADHH QQKEEENNTR PPKKMQKTAA AAATSPSIKP VQHYNPHKEA  420
KMSEPPTVVR KARVSVRSRC ETPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVAAGCPVR  480
KQVQRCAEDM SILITTYEGN HNHAIPPAAA AMASTTSAAA SMLLAGSTAS SCDDYHAVAA  540
RMLLQGASTS SAGGFPNNFS FATPGAAGLV QQAGGSCPTA PISGSIVAST SFPTIMLDLT  600
KEPTTQLSLQ FGSGSGPPAA TKAQSYVAHP FEAAAAASTT VAQYSARINA PVQTFPRASS  660
TQLAPLFLSN GNPNYRPTGM MQTATTTTST PDRQLEPGST ASCSSFQEHS YNTVVTRHEQ  720
PHAASAVLHQ ETVTALRTSS LAAASYNPSG SSQQLVAAGG AIDLTAPTTD QAAAAAAASK  780
SIADSISAIT ANPNFTAALA SAITSLLQSS TNNLTFQTHH HQQRQQQQQQ QQQQRASNQT  840
AAHDGSGAAP IQPQLVSYPG ELLALAPAAV QLRSTGTPPV MEFCDHSKDL YSSASSIEEE  900
EAASMLLLQQ QVAMLQQQQQ QQQQEHQESP AFTISRLLSS ALQFSMSTQE QGPQTTQLNS  960
AATMDHHPWT QN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	432	508	1	76	WRKY transcription factor 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	9e-41	WRKY family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0080s0048.2.p