PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0080s0029.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 506aa    MW: 56331.4 Da    PI: 6.5945
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0080s0029.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07730126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ykt+lC+ f+r G C++  +C+FaHg
  Sphfalx0080s0029.2.p  7 YKTKLCNLFQR-GNCPR-QSCSFAHG 30
                          9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-11336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5435IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244632IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-5730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MASHDLYKTK LCNLFQRGNC PRQSCSFAHG DFELRRFSNP MGGGSRSPFN GRLDSGYHNG  60
DLRDRLERRR SPPLRRRSPI RGRPAHYDRM LSPQDRGGRS RTRTPPIRPR PSRSLSPRRS  120
PPGKRREIKI ARTVAPDRQF SDVSGEACGA EDVTGDGDFN PGLERQISPN PHSLHTPRDT  180
LEDQLQQVQA HNNELADQKS KLELSLDKKI RETSDLLTEN QKLESRLAGA DEDYRRLGSK  240
FKLFVKIYAR YVRAQDVVEK TQSKLQRLVQ ELAIEGGEEL DIQVQDSDGL SEGDLQQPSC  300
TGAEPENPTT GQECLVVTDH MPLPAAVVHD EGHDKGPVPT RIVPTRVAGT SRESEGYSDT  360
HGDETAHSDP KLASPASLHL VQRVLNHSGA HENGFRSCEV EEEEDWPSGP RPSVHLSLAG  420
ATDKSDKIEA REEFFVPLDM KPSHCIEADI AKSSRSPVDE DFELQRKDHN LQGAVELHSQ  480
HGEGVNVSLS LASQAYCQNV TERGW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-12C3H family protein