PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0080s0029.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 510aa    MW: 56858.9 Da    PI: 6.6781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0080s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07730126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ykt+lC+ f+r G C++  +C+FaHg
  Sphfalx0080s0029.1.p  7 YKTKLCNLFQR-GNCPR-QSCSFAHG 30
                          9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-11336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5435IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4631IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244632IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MASHDLYKTK LCNLFQRGNC PRQSCSFAHG DFELRRFSNP MGGGSRSPFN GRLDSGYHNG  60
DLRDRLERRR SPPLRRRSPI RGRPAHYDRM LSPQDRGNWA RGRSRTRTPP IRPRPSRSLS  120
PRRSPPGKRR EIKIARTVAP DRQFSDVSGE ACGAEDVTGD GDFNPGLERQ ISPNPHSLHT  180
PRDTLEDQLQ QVQAHNNELA DQKSKLELSL DKKIRETSDL LTENQKLESR LAGADEDYRR  240
LGSKFKLFVK IYARYVRAQD VVEKTQSKLQ RLVQELAIEG GEELDIQVQD SDGLSEGDLQ  300
QPSCTGAEPE NPTTGQECLV VTDHMPLPAA VVHDEGHDKG PVPTRIVPTR VAGTSRESEG  360
YSDTHGDETA HSDPKLASPA SLHLVQRVLN HSGAHENGFR SCEVEEEEDW PSGPRPSVHL  420
SLAGATDKSD KIEAREEFFV PLDMKPSHCI EADIAKSSRS PVDEDFELQR KDHNLQGAVE  480
LHSQHGEGVN VSLSLASQAY CQNVTERGW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.19e-13C3H family protein