PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0080s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 545aa    MW: 57517.6 Da    PI: 6.2716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0080s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.8e-08366406954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Sphfalx0080s0016.1.p 366 ARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 406
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-13358415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-11359411No hitNo description
SuperFamilySSF474599.16E-14361416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5367406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MEGSWSHSVR GWSNSSLMGG PDSSCSMSSL FFGQDSIVPA GDICSKPKSC SYGAGRFQRP  60
DQVLLGGGGF ELAMSKADQL QQLETTTSRA RRGLILDSLL LRSSCSNSMV DSSSEIVTAA  120
DDQDVGLTCS ASSEQINMRR NHLMMPAHAS TGTAASCLQQ QLRSDSSSSG ARLQFCCIES  180
PAGPLSRGEN EEESQLQGSE PSFFNANSVS ACGELQGSFM TMGLKKETWM DLRLHEEKPF  240
VFQEHSPAYA GAVPSSLEAG GSYLNPQAPG HTVITPTAAI LPGFAATQSA PLPRSFAAAP  300
GAVLSHEGEL LQGESRIHNL RNKMASSMRA ILFRASLPMP TAAEIESSRP KRRNVRISKD  360
PQSVAARHRR ERISDRIRVL QRLVPGGTKM DTASMLDEAI HYVKFLKLQL QTLEQLGNHD  420
GSMCDPATIL YNGELAMGVE SPNTLAAAAD AAPMRAFDLN CTVHNQFNSS CETAAVGAAA  480
GGAAPGSVIV TPGSLSSGQS LDASCISSGV HWPTALSSVS NLVPFGGTSG GGQFPDPLQE  540
QFCH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-28bHLH family protein