PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0079s0079.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 763aa MW: 84151.8 Da PI: 5.2359 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 562 | 608 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L A+ YI++Lq Sphfalx0079s0079.1.p 562 NHVEAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAITYINELQ 608 799***********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.1E-60 | 59 | 236 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.39 | 558 | 607 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-19 | 561 | 626 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-15 | 561 | 612 | No hit | No description |
Pfam | PF00010 | 9.9E-11 | 562 | 608 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-18 | 562 | 625 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-18 | 564 | 613 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MDAQMQSLWQ TAESADHAMI EAFMGTGGFG LPNYSGQGQE DLGTGAAAGL ELSETVLLRR 60 LHSLVEETSL NWTYGIFWQL SASPTGELLL GWGDGYYKGP KESEINEMKL ADRGDREEDQ 120 QLRRKVLQEL QALVCCSEDD VSDNVTDTEW FYLVSMSYSF PQGVGIPGQA LATAQHVWLV 180 EANKASEHIS IRAHLAKMAG IQTILCVPTR NGVVELGSTD LIAENWDVVQ QVRLVFDELT 240 WGPNEVQTMS QCLLMHAEAN LQQQNASVRS LPETSGSITS FSQVNAADLG QAKEQDMNFG 300 AKLFPADKMG SPMPLAGPRP FPVNKLGSPL AFTSIEGLDY LWGQSEGFAF NDPLSVDPLE 360 KESGHTAMSY PVGRLSMQDE KQSFLTLNST QTGLTPDRKL SSLPDVVNAT VFPEQRSSLL 420 PAVERPHKKL ESSASLQQNR KLAMNGVSAP VVPRQSARVM EPAQQDKFKV LHARGDVTKN 480 IGEKKAEPAF KMQKQEQQSK TVGPPVISNV HSSSDHMEWN GMESEVEASF KENGVECSLS 540 TGPRPPRKRG RKPANNREEP LNHVEAERQR REKLNQRFYA LRSVVPNVSK MDKASLLGDA 600 ITYINELQSK LQEAEFRVKE LQCRASEICE KPADSGFPTA REQSGNSTKE GLSAKPQGSS 660 NSTSVMGTYF TKRTPDINVH ILGDEAMIRV NCLRDTCSIT NLMMSLQDLH LEVQHSNTSA 720 IEDALLHIII VRMKGAERLT EEQLSAALKR ACESYQPHVE VY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-36 | 51 | 237 | 3 | 193 | Transcription factor MYC3 |
4rqw_B | 3e-36 | 51 | 237 | 3 | 193 | Transcription factor MYC3 |
4rs9_A | 3e-36 | 51 | 237 | 3 | 193 | Transcription factor MYC3 |
4yz6_A | 3e-36 | 51 | 237 | 3 | 193 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370448.1 | 0.0 | transcription factor MYC4-like isoform X1 | ||||
TrEMBL | A9SFN9 | 0.0 | A9SFN9_PHYPA; Predicted protein | ||||
STRING | PP1S74_41V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 5e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0079s0079.1.p |