PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0079s0065.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ARF
Protein Properties Length: 872aa    MW: 97442.6 Da    PI: 5.9064
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0079s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.65e-23134235199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L++gD+v+F
  Sphfalx0079s0065.1.p 134 FCKNLTASDTSTHGGFSVPRRAAEKVfppldylQQPPAQ--ELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSIFVNNKRLQAGDSVLF 220
                           89*****************************87656555..8*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++l+++++r 
  Sphfalx0079s0065.1.p 221 I--RDDQGQLLLGIRRV 235
                           *..5689999***9985 PP

2Auxin_resp118.94.1e-39260342183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a haa+t+s F+++YnPr+s+seFv++v+k+ ka++++v vGmRf+m fete+ss rr++Gt++g++dldp+rWp+S WrsLk
  Sphfalx0079s0065.1.p 260 ANHAATTNSRFTIFYNPRQSPSEFVIPVAKYCKAINTQVDVGMRFRMVFETEESSVRRYMGTITGIEDLDPIRWPKSGWRSLK 342
                           679******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-46125263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-41126249IPR015300DNA-binding pseudobarrel domain
CDDcd100175.46E-21133234No hitNo description
PROSITE profilePS5086312.619134236IPR003340B3 DNA binding domain
SMARTSM010191.8E-21134236IPR003340B3 DNA binding domain
PfamPF023626.1E-21134235IPR003340B3 DNA binding domain
PfamPF065078.4E-35260342IPR010525Auxin response factor
PfamPF023094.6E-9742830IPR033389AUX/IAA domain
PROSITE profilePS5174522.163743827IPR000270PB1 domain
SuperFamilySSF542774.97E-8760822No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MYPCPPMRLP ASGYSPPSVT EQERRFLNSE LWHACAGPLV SLPPVGSRVV YFPQGHTEQV  60
TASTQKELDA RIPNYPNLPS RLFCLLDNVT LHADLETDEV YAQMTLIPLP ASQQKDPLLT  120
QDFPQANRQP TLFFCKNLTA SDTSTHGGFS VPRRAAEKVF PPLDYLQQPP AQELVARDLH  180
DQEWHFRHIY RGQPRRHLLT TGWSIFVNNK RLQAGDSVLF IRDDQGQLLL GIRRVQRQQT  240
IMPSSMLSSD SMHIGVLAAA NHAATTNSRF TIFYNPRQSP SEFVIPVAKY CKAINTQVDV  300
GMRFRMVFET EESSVRRYMG TITGIEDLDP IRWPKSGWRS LKVGWDESTA GERQQRVSIW  360
DIEPLTTPFL LYPPPLALRS KRTRRGRGED DIESLLNKPQ MWADGSDSQG VLDFRSLAMD  420
SMWMWPPQQR LESAVPSPQN GNYRVMAAEA LQEIRTGHSS KQLHPQPVLP SSPQLQFHQQ  480
QQNQQSMHQR VDAPGPQLQL SFSGPQSQMD LGCSARPAAD YCESDLQMGS SSFSLQGMLG  540
RVQPSNPISE NNQFFNILQP SQRAIQIQAS DLLVQDSQVS LPWFPAMQNQ IQTDPQLMAT  600
ARLGQVDTAP SSQVVGALTH LQNHEVNAQA GLVEHPPLGF SDNDQDAEQL QADRSHLLFG  660
VPIDQPLTAS ASLTSHTFEK TKEQQNGFSG NSNVLQGSLC PRTTPDLPTI PSGVISSGSL  720
DDNGLYQQNS DAWPSMQSAP PLRTFVKVHK LGMPGRSLDI RNFHNYAELR SELACMFNLE  780
GILDGPVKSG WQLVFVDHEN DTLLVGDDPW EEFVNCVRSL KILSPSEVLQ MSHDQFEILD  840
AVPMQQHRPS NSNNSEETHT QTPTPNPQMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1552736351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385779.10.0auxin response factor 6-like isoform X1
RefseqXP_024385788.10.0auxin response factor 6-like isoform X1
RefseqXP_024385797.10.0auxin response factor 6-like isoform X1
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A2K1LBN00.0A0A2K1LBN0_PHYPA; Auxin response factor
STRINGPP1S163_119V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Oh E, et al.
    Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
    Elife, 2015.
    [PMID:24867218]
  3. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  4. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  5. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  6. Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
    Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
    Genet. Mol. Res., 2015. 14(3): p. 7386-94
    [PMID:26214417]
  7. Li P, et al.
    Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
    Plant Cell Environ., 2016. 39(2): p. 377-92
    [PMID:26296956]
  8. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  9. Luo S, et al.
    Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 1156
    [PMID:26734051]
  10. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  11. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  12. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]