PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0079s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ARF | ||||||||
Protein Properties | Length: 872aa MW: 97442.6 Da PI: 5.9064 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 5e-23 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L++gD+v+F Sphfalx0079s0065.1.p 134 FCKNLTASDTSTHGGFSVPRRAAEKVfppldylQQPPAQ--ELVARDLHDQEWHFRHIYRGQPRRHLLTTGWSIFVNNKRLQAGDSVLF 220 89*****************************87656555..8*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++l+++++r Sphfalx0079s0065.1.p 221 I--RDDQGQLLLGIRRV 235 *..5689999***9985 PP | |||||||
2 | Auxin_resp | 118.9 | 4.1e-39 | 260 | 342 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a haa+t+s F+++YnPr+s+seFv++v+k+ ka++++v vGmRf+m fete+ss rr++Gt++g++dldp+rWp+S WrsLk Sphfalx0079s0065.1.p 260 ANHAATTNSRFTIFYNPRQSPSEFVIPVAKYCKAINTQVDVGMRFRMVFETEESSVRRYMGTITGIEDLDPIRWPKSGWRSLK 342 679******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.19E-46 | 125 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-41 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.46E-21 | 133 | 234 | No hit | No description |
PROSITE profile | PS50863 | 12.619 | 134 | 236 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-21 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-21 | 134 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.4E-35 | 260 | 342 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.6E-9 | 742 | 830 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.163 | 743 | 827 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.97E-8 | 760 | 822 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MYPCPPMRLP ASGYSPPSVT EQERRFLNSE LWHACAGPLV SLPPVGSRVV YFPQGHTEQV 60 TASTQKELDA RIPNYPNLPS RLFCLLDNVT LHADLETDEV YAQMTLIPLP ASQQKDPLLT 120 QDFPQANRQP TLFFCKNLTA SDTSTHGGFS VPRRAAEKVF PPLDYLQQPP AQELVARDLH 180 DQEWHFRHIY RGQPRRHLLT TGWSIFVNNK RLQAGDSVLF IRDDQGQLLL GIRRVQRQQT 240 IMPSSMLSSD SMHIGVLAAA NHAATTNSRF TIFYNPRQSP SEFVIPVAKY CKAINTQVDV 300 GMRFRMVFET EESSVRRYMG TITGIEDLDP IRWPKSGWRS LKVGWDESTA GERQQRVSIW 360 DIEPLTTPFL LYPPPLALRS KRTRRGRGED DIESLLNKPQ MWADGSDSQG VLDFRSLAMD 420 SMWMWPPQQR LESAVPSPQN GNYRVMAAEA LQEIRTGHSS KQLHPQPVLP SSPQLQFHQQ 480 QQNQQSMHQR VDAPGPQLQL SFSGPQSQMD LGCSARPAAD YCESDLQMGS SSFSLQGMLG 540 RVQPSNPISE NNQFFNILQP SQRAIQIQAS DLLVQDSQVS LPWFPAMQNQ IQTDPQLMAT 600 ARLGQVDTAP SSQVVGALTH LQNHEVNAQA GLVEHPPLGF SDNDQDAEQL QADRSHLLFG 660 VPIDQPLTAS ASLTSHTFEK TKEQQNGFSG NSNVLQGSLC PRTTPDLPTI PSGVISSGSL 720 DDNGLYQQNS DAWPSMQSAP PLRTFVKVHK LGMPGRSLDI RNFHNYAELR SELACMFNLE 780 GILDGPVKSG WQLVFVDHEN DTLLVGDDPW EEFVNCVRSL KILSPSEVLQ MSHDQFEILD 840 AVPMQQHRPS NSNNSEETHT QTPTPNPQMG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-155 | 27 | 363 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385779.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_024385788.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Refseq | XP_024385797.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A2K1LBN0 | 0.0 | A0A2K1LBN0_PHYPA; Auxin response factor | ||||
STRING | PP1S163_119V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0079s0065.1.p |