PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0079s0055.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 1032aa    MW: 110253 Da    PI: 6.0506
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0079s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1669113147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Sphfalx0079s0055.1.p  69 RERWTEEEHQRFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 113
                           78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-1663119IPR009057Homeodomain-like
PROSITE profilePS5129421.75564118IPR017930Myb domain
TIGRFAMsTIGR015576.1E-1767116IPR006447Myb domain, plants
SMARTSM007174.7E-1368116IPR001005SANT/Myb domain
PfamPF002491.6E-1369112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-969109IPR009057Homeodomain-like
CDDcd001671.13E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MMIMTPSSAG DGEPHQAGGG GCGGEEGKLL QWSSSVAAAA VVGSSAAAAQ DDALENTKVR  60
KPYTITKQRE RWTEEEHQRF LEALKLYGRA WRRIEEHIGT KTAVQIRSHA QKFFSKVERD  120
HQAIACGIDT AGMVSQSLID IPPPRPKRKP SHPYPRKARG NSFSKHSDDN TTVVSSSSGL  180
ATEKSEEEEG FGKSSTMQED DTTTQVDEES SPPSLPKEKE DLGEDIKLPA VAPRQVLSEP  240
SSWVPFPPFH HYPPWGSCFQ NQVPHPNQHP AYGNLEKLAP FSGFVMPQEF MLPWHPSPMA  300
CTSSSVPQDL PAMAAPAVPT LWPAIGSETS AITTSDFSEI GSNTSSKGTE AVTSTAAMAA  360
AASVTIAAAS AWWALQNMAS PLSLTAMGGA LYNPVMAAIP SPLLFSEGQL LQPDCGGQNS  420
EPVAEDTPPL EQTLEDSSKE LLHSGHELVS SSAVQRPQRA VRVKEVKGRR GLAMMSSAGS  480
SDLCGSSSWG GHCLTPGSGG DSSREVGQRL ELLKSSGESI SRSPSNAGSS PTKLHKLKSQ  540
LSGLVQKELS SVHAKSSKDE GDEVGFEYWK HLRDESYSGF SMNPVTCSSP KLGVSGSPAF  600
QFLNSRGFSR FNSFPEECVN QDPYAKSSEE HQPALQTSSG SEASGSDGGI LAENASGEGG  660
GPSSNSSACG NLPEGNDPSG SSEGSSDVEV PSNVTSNCRE ENNGRSASEA EIVENEPEEA  720
QVSHFSHDAH LTTLRKDSEK HPQECAFRLL PRSLSLTSKK QIEAMGRGQI AFQALFAQDT  780
LPRTFTPPPR DSVAAHRTQA HDSGVVKQSL SFRLQSRISH SKASSFGSLP ADEDHPHHAI  840
DVAADQDSAF NAWQPSKPSE GSGAKIERCE SSSITMSSGA RVTKGAEEQQ SPQRTNNAKR  900
KERCGEGSAI NWLTLGTESS GLKQVKYNAE DQNFNSQREL LQKETFAPNI DFFPRQKKEK  960
SVASLKVHDT GSSAFVELSS VPLSGKTHMF PLSIATSGTA LSTISSTKSV KYSGLGFVPY  1020
QRASLEPSLQ L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-33MYB_related family protein