PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0078s0059.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

G2-like

Protein Properties

Length: 297aa MW: 32174.1 Da PI: 9.487

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0078s0059.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.5	1.7e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av qLGGs+kAtPkt++++m+vkgLtl+h+kSHLQkYRl Sphfalx0078s0059.1.p 49 KPRLRWTPELHERFVDAVMQLGGSDKATPKTVMRVMGVKGLTLYHLKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.359	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-33	47	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.04E-16	49	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-24	149	196	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MYQMKKYTSP GFMPHRTQTS SSNLQDRLAL YASGNLSGDA GAGAGGDPKP RLRWTPELHE 60 RFVDAVMQLG GSDKATPKTV MRVMGVKGLT LYHLKSHLQK YRLGKQLHRE GSVPEAKDGP 120 HGCSDGQGAN VASGQSMVTP KSQNPQESIQ ITEAIRMQVD FQRRLQEQLE VQRHLQLRIE 180 AQGKYLQSIL EKAKETLANH TAATPGLEAA HVELTELASK VITDPLGPSF PSLGLPNLSS 240 AHEDNSQGVS LQHQFSRVSD TSSQKSYLTN LTVKPEDSGG GSGSSEHQAS TGMRKH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-22	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	49	105	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373739.1	1e-110	protein PHR1-LIKE 3-like
Swissprot	Q94A57	3e-69	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2R6WF74	1e-110	A0A2R6WF74_MARPO; Uncharacterized protein
STRING	PP1S13_270V6.1	1e-110	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0078s0059.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]