PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0077s0055.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LBD

Protein Properties

Length: 336aa MW: 36560.6 Da PI: 8.3075

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0077s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.9	2.5e-31	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++ +++a+pe +r+++++sl+yeA+ r+ +Pv G+vg++++++ Sphfalx0077s0055.1.p 2 SCNGCRVLRKGCSDTCILRPCLqwidsPDAQGHATVFVAKFFGRAGLMGFISAVPEPQRPALFQSLLYEACGRTVNPVFGSVGLLWSGN 90 6***********************999******************************************************** PP DUF260 85 qqleqlkaelallke 99 +q +q+++e++l+++ Sphfalx0077s0055.1.p 91 WQTCQAAVETVLRGS 105 ******9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.174	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSCNGCRVLR KGCSDTCILR PCLQWIDSPD AQGHATVFVA KFFGRAGLMG FISAVPEPQR 60 PALFQSLLYE ACGRTVNPVF GSVGLLWSGN WQTCQAAVET VLRGSSLQAP APSSLNASCF 120 LTSTPGLLAP FPVHGVSKQF EAAQTPAPIK PELEPNSNLQ KRRNSATSGF EDPASYSSFP 180 DFQGRVPQVH PLNDMEGWNM QMPNINSAHR ETKVEDDASY GPPISAQRAP RRVKSKISPE 240 RDVQTATIDV EQLELDLTLK VKSNTARGAL QVRRQHPPCP TFKRKLLSPC ESVSSEGSVT 300 SLDSLTHHSL CGNWPSLHTN SLECKPHYKL LSLLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024375699.1	6e-75	uncharacterized protein LOC112282397
Refseq	XP_024375700.1	6e-75	uncharacterized protein LOC112282397
TrEMBL	A0A2K1KIP4	1e-73	A0A2K1KIP4_PHYPA; Uncharacterized protein
STRING	PP1S41_47V6.1	2e-74	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	4e-67	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Sphfalx0077s0055.1.p