PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0076s0027.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family LBD
Protein Properties Length: 405aa    MW: 43522.5 Da    PI: 8.3196
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0076s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.52.4e-292103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C+l+p++      ++q +++ +v+k+FG++ ++ +++a+p+ +r+++++sl+yeA+ r+ +Pv Gavg++ +++
  Sphfalx0076s0027.1.p   2 SCNGCRVLRKGCSESCILRPCLqwienSDAQGHATVFVAKFFGRAGLMGFISAVPDVQRPALFQSLLYEACGRTVNPVFGAVGLLGTGN 90 
                           6*********************9988666788********************************************************* PP

                DUF260  85 qqleqlkaelall 97 
                           +ql+q+++e++l 
  Sphfalx0076s0027.1.p  91 WQLCQAAVETVLK 103
                           *******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.0611107IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIENSD AQGHATVFVA KFFGRAGLMG FISAVPDVQR  60
PALFQSLLYE ACGRTVNPVF GAVGLLGTGN WQLCQAAVET VLKGGSLRPP HPLKLSSSSL  120
PQGLQSSTQL ENPVATNEIW DSGIQNVLPS HPSPKLFNGH EFHNSKSSLE GIGFMDRNLQ  180
RAHEGHKEQK NVHSGVRGDL NGSNCTTAQE LQQQRMAQGN APHLSTWPGA VSLVRFCPSK  240
DQTNSLQVKG EQALGMSSYK QMDAAMEGGM SECLNHNIQI IAPVARRVKP CLRAAQHANG  300
KAVPKSEPQE IFAAGLVSYG SKHQPELELD LTLKVQDAKG DSPATGFRVT SPSCESVISE  360
GSVTSHSRQV VQSQPLISSW AQIERPSPAV VPLPLHHKLL PLLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-64LOB domain-containing protein 37