PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0074s0066.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 347aa MW: 39018.8 Da PI: 5.9225

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0074s0066.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.3	5.3e-15	80	167	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ + +Li+a r++ ++l r++ + ++W+evsk + +++ ++++qC+ k ++l+kry+++k+ ++ ++p+fd Sphfalx0074s0066.1.p 80 EWSETATSVLIAAFRDKFHALDRSNFRSKDWAEVSKIVnatcgNDEKAPKTQEQCRMKVDSLKKRYRQEKDKLAGN---IPCKWPWFDM 165 5***************************************9999************************95...55679*99 PP trihelix 85 le 86 l+ Sphfalx0074s0066.1.p 166 LD 167 97 PP
2	FLO_LFY	25.9	1.3e-08	259	314	65	124
FLO_LFY 65 vakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeee 124 + k+a +tv tL++m d+eld++m+ e f +d Ger G+kaa+ + +r+l +e Sphfalx0074s0066.1.p 259 AKKLASSKYTVATLLEMSDRELDEIMA---EEF-IDAARGERRGFKAAIWSRKRKLAQEC 314 56899999**************996...455.79999**************98843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.2E-19	79	169	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEDESCEAAS DGGDLVATAD AVHDHRHHHL QHQIAGQLES HEEQQQLQLH HDSEFEEEPV 60 LGKIESPHNK SVLGREPATE WSETATSVLI AAFRDKFHAL DRSNFRSKDW AEVSKIVNAT 120 CGNDEKAPKT QEQCRMKVDS LKKRYRQEKD KLAGNIPCKW PWFDMLDDLI GGSPKQSRVG 180 SARRQARFLC SPPPGRPPSV VHTPYFGALS PSVYLKKKLT RVVNLQDSLD QDLMAGSLED 240 NIEALLHNFL EEETARDFAK KLASSKYTVA TLLEMSDREL DEIMAEEFID AARGERRGFK 300 AAIWSRKRKL AQECGEDMDL VNPSGSMMEI SDNFAKKEKK SGSFVQ*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEDESCEAAS DGGDLVATAD AVHDHRHHHL QHQIAGQLES HEEQQQLQLH HDSEFEEEPV  60
LGKIESPHNK SVLGREPATE WSETATSVLI AAFRDKFHAL DRSNFRSKDW AEVSKIVNAT  120
CGNDEKAPKT QEQCRMKVDS LKKRYRQEKD KLAGNIPCKW PWFDMLDDLI GGSPKQSRVG  180
SARRQARFLC SPPPGRPPSV VHTPYFGALS PSVYLKKKLT RVVNLQDSLD QDLMAGSLED  240
NIEALLHNFL EEETARDFAK KLASSKYTVA TLLEMSDREL DEIMAEEFID AARGERRGFK  300
AAIWSRKRKL AQECGEDMDL VNPSGSMMEI SDNFAKKEKK SGSFVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024379771.1	1e-154	uncharacterized protein LOC112284305
TrEMBL	A0A2K1KA39	1e-153	A0A2K1KA39_PHYPA; Uncharacterized protein
TrEMBL	A9SY87	1e-153	A9SY87_PHYPA; Predicted protein
STRING	PP1S136_122V6.1	1e-153	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	5e-22	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0074s0066.1.p