PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0073s0036.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB_related
Protein Properties Length: 835aa    MW: 92428.5 Da    PI: 6.929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0073s0036.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07607654347
                           SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                           +WT  E++ ++ +v++ ++      W+ I++ ++ gR+  +++s+++++
  Sphfalx0073s0036.2.p 607 NWTRKEEKMFKALVRLNPPSlnknFWDEIPNAFP-GRSTSDLVSYYFNV 654
                           7*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010148.4E-4201291No hitNo description
PROSITE profilePS5101113.09204295IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.606.7E-10207288IPR001606ARID DNA-binding domain
SuperFamilySSF467741.01E-10210288IPR001606ARID DNA-binding domain
PfamPF013882.0E-6214287IPR001606ARID DNA-binding domain
SMARTSM007174.8E-5604657IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-4606654IPR009057Homeodomain-like
SuperFamilySSF466896.32E-5606655IPR009057Homeodomain-like
CDDcd001673.34E-6607655No hitNo description
PfamPF002491.4E-5607654IPR001005SANT/Myb domain
PROSITE profilePS500906.202607655IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MNGECKRPLE HSISSQPLKY LRQSAADQQA PTRDASTRVI SIQAPVVINS VQQVTCDVLH  60
LDTPALQSSK GSGSDRPDGG GTVGCMESWH SDMQGHTGHK GLQSGIRCHM AAHEASSNLW  120
AQESALDRAL NVSRRQSSFP AVVGCSQPLV VGELVPKHLM ERARDGGQME TQVQEGGIAQ  180
DEKTVEHDRE ENRGNHSSGT EAGHVNSASY MQIIKRSLEA QPLSMGRPLL VRMGEKEVNL  240
LSLYRWVNIM GGYKKVTDCG SWATISDSLG LGRDCGPGVK LVYAKYVATN DAARVLGVQT  300
LAGTGEPSAP YTLELASHAE RKENYEDNSS EEYMGRQALS RDGRNHAGPN QISSTVTQHD  360
CRGQSAEVMS LHEKSLVGMI GWLKDTAVGL DTSQYRQSGM SSQEQFFRSL ARRVRSVLWM  420
RREELRTADG VPIQARQLPS PAVYYEDPAQ GEPQPKEKLR TTRERLAHYG SQSPFPDHQP  480
RTKRVPVGSD FQAFVKPWSS QDKKHCTGKR GQAKIGRDDE TQSSDEESSD SSRWLGSRVW  540
PPSGGEQMVN KSRDGRGREP TCLCPRPGSL ECVRLHVETG RQHLKGELGQ AFQLWGFDQV  600
GEGVATNWTR KEEKMFKALV RLNPPSLNKN FWDEIPNAFP GRSTSDLVSY YFNVFVLRRR  660
AIQNRRRGEK IDSDDDETEL FDSESDDDSS DDDSFHEDSG KGALKDASLC SMKATSLHNS  720
NLQQGPTVTY SKEPDTAMTY QAIGDNGNGP GHADLFFQHV QKEVCCFNSE RKGNNCVEEQ  780
SKTSQGKDSH QWGHLYWPNK PHLSATTVEP TAPTRSALLE GQNRTGQSQN YRQI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-