PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0073s0028.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 472aa    MW: 49989.9 Da    PI: 6.1622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0073s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11254295854
                           HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                            Er+RR+++N+++  Lr l+Pk +      K++Ka+i   Av+Y+++L
  Sphfalx0073s0028.1.p 254 SERKRRKKLNEGLYSLRALVPKiS------KMDKASIIGDAVNYVQEL 295
                           6*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15246304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-12248300No hitNo description
SMARTSM003538.4E-15252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14253304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8254295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGAGKREVCG ASAAAAQWVE DVSTSGQLQQ RLNGHTVPIA AAHHEPLHHL VTGATGATSA  60
AAAATDTQES ENYGHLNVLS HHESKPWVAA TSKLQEVDPF CMLQELKPVM LSESTGTVVS  120
TSPVVSRTAA AAAAATELKS AAMAAWPSAR KVQSRTAYNS LPALGTSTNT QGFANDDLHG  180
LNHHVVEAAS SWPQGGQTAG AGGGADSSED CSGGDVGSGL MNNMNVGEKK YQKQSLCSYR  240
ALTPSSTVSK NLVSERKRRK KLNEGLYSLR ALVPKISKMD KASIIGDAVN YVQELRKEVE  300
EMELAESLNV ESECCGSVGD DSGSIITDTT GPEDAVMTVI NGSYTNEAKA AAAAPAADST  360
NQKSPNITTE KNSPSQVHSV KRKILHVEVA RLEDETYHLR ILCQKGHGVL VQLMQALESL  420
GIDVVNAHHT SVQDNILNTF VAQIKNWEMM ETEDVRQKLL NVVAQYGLVQ A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254261ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-29bHLH family protein