PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0073s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 264aa MW: 28835.3 Da PI: 6.607 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5e-07 | 112 | 132 | 1 | 22 |
--S---SGGGGTS--TTTTT-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCk 22 ykt+lC+ f G C+yG++C+ Sphfalx0073s0003.1.p 112 YKTRLCNKFNN-GGCPYGAQCR 132 9**********.*********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 9.42E-5 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-8 | 110 | 132 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-4 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.845 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MFRHQKYVRP GAVYETTNHG VLNLNLTVEV NHEKKSTKNL SLGSQSSEQC LDALELDGEE 60 GDESLDESVQ PVRMELKPDE MAAAVHAVPA LIKGVNQDTE QGNVGGWSTH LYKTRLCNKF 120 NNGGCPYGAQ CRAPHGWLPP SWSGPEQPWS VHPPGLSSVE CPPHVGQFGP PPQTGMVPLP 180 FLPTKGQPDF GRPPLPSGPL CHPSFGPHNG IRPPPPWTPN GWPAPPSAWV EPHHGLHPGN 240 FGWRHNEGVL HPDLLSPPLQ QHRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0073s0003.1.p |