PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0072s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 15760.7 Da PI: 10.3327 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.6 | 1.5e-13 | 33 | 76 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 +++GVr ++ ++Wv eIr s ++++++lg++ t++eAa+a++a Sphfalx0072s0070.1.p 33 QFRGVRHRRELKKWVTEIRPTS---QKRKIWLGTYETPQEAARAYDA 76 59***************99942...35*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.31E-14 | 32 | 79 | No hit | No description |
PROSITE profile | PS51032 | 14.803 | 33 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-12 | 33 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-19 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-13 | 33 | 90 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-9 | 34 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
INYKLRNIDL NKEPPPAWDT DECASSGNSS TAQFRGVRHR RELKKWVTEI RPTSQKRKIW 60 LGTYETPQEA ARAYDAGIFY TKKKIPYNFE DSPHQLRNHP IPTELPWENF AALVKQRATS 120 AAKRHRANVQ DQATAQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024402755.1 | 9e-66 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Refseq | XP_024402756.1 | 9e-66 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A144LHF6 | 6e-65 | A0A144LHF6_9BRYO; Dehydration-responsive element-binding protein 5-9 | ||||
STRING | PP1S17_332V6.1 | 3e-65 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 4e-14 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0072s0070.1.p |