PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0072s0003.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 758aa    MW: 76973.7 Da    PI: 4.5927
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0072s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11569611754
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++ErrRR+++N+++  Lr+++Pk      +K++ a+iL  A+eY+k+L
  Sphfalx0072s0003.1.p 569 MAERRRRKKLNDRLYMLRSVVPKI-----TKMDRASILGDAIEYLKEL 611
                           79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.599562611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16565630IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9568611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14568617IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15569625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.08E-13569615No hitNo description
CDDcd048732.62E-6681740No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010444Biological Processguard mother cell differentiation
GO:0050826Biological Processresponse to freezing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MDEDQEGTCC SQEDQCLGNS RAAAGGGGGA AAAVAGGVQL DEEEWYMAGT PEDQTSLSIM  60
DDMKEFSSCC YSTSSPGSSC LVQQAMDTVH GVVPAALYPS SIFLLDSPQF QSFLSPSHST  120
RNLGSGVPGS CSFSNNNNNN RSSAGAGVGS LSALLDPAAS SLSGAFDNSC SGGFRTAAGG  180
IHTSSCSGLL QLDGLGCDQL QGQAAASVVG GSGGGRSGPL MQGICSSSSS DGGLTSSCNG  240
IITLSPPRSA STTFSNIVSV NSVSPSSFGN NFAAGGRNGL TGVISGGGFS SDVSCFGTIA  300
AANSHASQRN ASGGKQAAAG NQLDPFLQLS NTVDQRGGGG GGSSAAASGP AFPRPKLMDH  360
GSGSSSSQTL FQKRAASRHC NNNNSTGAAG GIGASPTMMI KSPPPPAAAL VLTSASNDSS  420
MDMMPEEDHS PHNGKGKQIQ RLQALGGGGS SGCKRVRVAG GQNYSASDDL VGLVEEDDEE  480
EEEDGGGGEL QDDAKEEEDD EEPDELDESG GDGSGALLYE TDDTLGGGMD GGGGGGAGGG  540
GHGMVFGGHG GGSNNKGKGK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KITKMDRASI  600
LGDAIEYLKE LLQRINDLHT ELEAAGTQSS SQQPFAAAGS TLACQTTVKE ECPNNPSLPI  660
ITDIQPARVE VRIREGRALN IHMFCARRPG LLLSTMRALD GLGLDVQQAV ISCFNGFALD  720
VFRAEQAKEV EIGPDEIKAV LLHTAHTAAT CGQNTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1555561KGKGKKG
2570577ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364775.13e-95transcription factor MYC2-like
RefseqXP_024364783.13e-95transcription factor MYC2-like
RefseqXP_024364792.13e-95transcription factor MYC2-like
RefseqXP_024364799.13e-95transcription factor MYC2-like
RefseqXP_024364801.13e-95transcription factor MYC2-like
RefseqXP_024364811.13e-95transcription factor MYC2-like
RefseqXP_024364817.13e-95transcription factor MYC2-like
RefseqXP_024364818.13e-95transcription factor MYC2-like
RefseqXP_024364819.13e-95transcription factor MYC2-like
TrEMBLA9RVD02e-94A9RVD0_PHYPA; Uncharacterized protein
STRINGPP1S30_360V6.11e-94(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.17e-79bHLH family protein