PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0071s0095.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 373aa    MW: 40478.3 Da    PI: 6.8915
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0071s0095.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18237291256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ ++tkeq   Lee F+ +++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0071s0095.1.p 237 RKKLRLTKEQSALLEESFKDHSTLNPKQKTALAKQLHLRPRQVEVWFQNRRARTK 291
                           788899***********************************************98 PP
2HD-ZIP_I/II124.35.7e-40237326191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rl+keq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr 
  Sphfalx0071s0095.1.p 237 RKKLRLTKEQSALLEESFKDHSTLNPKQKTALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTQENHRLRKELQELR- 324
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  Sphfalx0071s0095.1.p 325 AL 326
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-18222287IPR009057Homeodomain-like
SuperFamilySSF466896.42E-18226294IPR009057Homeodomain-like
PROSITE profilePS5007117.265233293IPR001356Homeobox domain
SMARTSM003897.5E-16235297IPR001356Homeobox domain
PfamPF000469.3E-16237291IPR001356Homeobox domain
CDDcd000863.99E-17237294No hitNo description
PROSITE patternPS000270268291IPR017970Homeobox, conserved site
CDDcd146860.00169284325No hitNo description
SMARTSM003406.9E-20293336IPR003106Leucine zipper, homeobox-associated
PfamPF021834.2E-11293327IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MQLEMQENGM RSLVMGASSI GGMTTSSTWT SLGLSAVEEE EEEEIARLGA AGVVVVDVNV  60
PCYSRRSSSR RQSPPVQLDL LPGCCTMRSS AHSSETSTPA PSSVTNPCFS WQMLASRTNS  120
GSAAGGYVDD GEVETYSSAA APEHHGVSRK SYRDIDINQL PSATTDGGDE LGAVVSTSPE  180
SSIGMIKRER SGVHDVFDHL QEKSDRGGGF ELSSRAGTAA AGAGVSDDDE DGGTNTRKKL  240
RLTKEQSALL EESFKDHSTL NPKQKTALAK QLHLRPRQVE VWFQNRRART KLKQTEVDCE  300
VLKRCCENLT QENHRLRKEL QELRALKLVA APPPPPYHVQ LAAHARHDFY NNMPLPAATL  360
TMCPSCKRLG KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235241TRKKLRL
2285293RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.19e-85homeobox-leucine zipper protein HAT4-like
SwissprotA2YW031e-60HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2K1KAR22e-83A0A2K1KAR2_PHYPA; Uncharacterized protein
STRINGPP1S42_217V6.13e-84(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-55homeobox from Arabidopsis thaliana