PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0071s0093.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 377aa    MW: 40326 Da    PI: 7.3881
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0071s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18224278256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Sphfalx0071s0093.1.p 224 RKKLRLSKEQSLLLEESFKDHSTLNPKQKIALAKQLGLRPRQVEVWFQNRRARTK 278
                           778899***********************************************98 PP
2HD-ZIP_I/II123.31.2e-39224313191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq+ lLEesF+ +++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+eaLkr+++ l+een+rL+ke +eLr 
  Sphfalx0071s0093.1.p 224 RKKLRLSKEQSLLLEESFKDHSTLNPKQKIALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEALKRCCKDLTEENRRLQKELQELR- 311
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           +l
  Sphfalx0071s0093.1.p 312 AL 313
                           55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-18212274IPR009057Homeodomain-like
SuperFamilySSF466892.47E-18213281IPR009057Homeodomain-like
PROSITE profilePS5007117.135220280IPR001356Homeobox domain
SMARTSM003891.5E-16222284IPR001356Homeobox domain
PfamPF000461.7E-15224278IPR001356Homeobox domain
CDDcd000867.25E-17224281No hitNo description
PRINTSPR000313.1E-5251260IPR000047Helix-turn-helix motif
PROSITE patternPS000270255278IPR017970Homeobox, conserved site
PRINTSPR000313.1E-5260276IPR000047Helix-turn-helix motif
CDDcd146860.0011273312No hitNo description
PfamPF021839.1E-10280314IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-21280323IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MQLASMERIR ANMVAASSGV VCSSFGLSGA GHGVYYGGPL EINCRQSHDP PVHELELLPM  60
KSSRNSSETS TPAPSSVTNP GSSFSWQPQQ QGALAASRTN SAGGIYDAEA GEVGTSGSRG  120
GSPRAVQFDM NRLPSTTDCD QEAVVTSASP SSNITGMKRG RSRDQMNNLQ HACSEEYLEE  180
EELQDMSNRA GSCVDFMSSR SAAADAAAAA AGGGSDDEDG GNTRKKLRLS KEQSLLLEES  240
FKDHSTLNPK QKIALAKQLG LRPRQVEVWF QNRRARTKLK QTEVDCEALK RCCKDLTEEN  300
RRLQKELQEL RALKLAPPTC VISHDVYMAP LPAATLTMCP SCARVATVDN RAAAHTAFSK  360
ATAFSSHFSQ SSAACT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222228TRKKLRL
2272280RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-103homeobox-leucine zipper protein HAT4-like
SwissprotP466027e-64HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2K1KAR21e-101A0A2K1KAR2_PHYPA; Uncharacterized protein
STRINGPP1S42_217V6.11e-102(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-51homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]