PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0071s0020.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 650aa    MW: 69794.5 Da    PI: 6.804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0071s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16449495455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Sphfalx0071s0020.1.p 449 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 495
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-19443504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-20443504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.495445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.50E-18448499No hitNo description
PfamPF000101.1E-13449495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MQGEASNGSK TQWPPHYEPQ WNNGQVVEDG VTLSRPSASS ANKDGAVVAV VSETAAETPV  60
APNIDYHDDE MVSWLQYPLD DSLERNYYSD FFGELPSSNM QVVKGSFVGQ GAGGRLQHLP  120
VASNMGTDSV VNKTANVAMT LGAGRAAGVI PQAGAEAFSK VRTLQPLTSK WQPFSLTPNS  180
SKGFCVYPSA SQALLGASPN ASRPLPAPRA PLKPQPRPGT HNLQAESARK LAPVNFSHFS  240
RSATIMKKYQ DVGVLSDTPS NMLDKQKLVK ANIDTTTSTG SLIAESTTMG RSGIGSQKDT  300
EIHLQGSGNQ QQEPGVDAGR VVPIPVTRKE VESPLLEGEA VLCKTKPAEE DTLRLSSVTC  360
IDVLESADKG LSQGKKLPDA QEPAITSPSG GSGNSAERVK EASTSNKRKA VVTEETEYQS  420
EDGEDESADL KKRPEGRAST TKRTRAAEVH NLSERRRRDR INEKMKALQE LIPNSNKTDK  480
ASMLDEAIEY LKMLQLQLQM MSMRTGMSIS AMGMPSGMQH LQIPQMAGIP PLGMGMGMGM  540
GMGMGMGMRM MDMAASGSGQ GGMPLPSHAG TSHGASIPVT SVNIVDVHNP RFHNPNVMEA  600
SQAYQQQPLQ IPQPMNMDMY NAYMLQQHQN QQQQHHQYQS SNMGGGPPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453458ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361326.11e-165uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361334.11e-165uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361343.11e-165uncharacterized protein LOC112275291 isoform X2
RefseqXP_024361352.11e-165uncharacterized protein LOC112275291 isoform X2
TrEMBLA0A2K1L0R31e-163A0A2K1L0R3_PHYPA; Uncharacterized protein
STRINGPP1S84_22V6.11e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-32phytochrome interacting factor 3