PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0071s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 739aa MW: 78197.8 Da PI: 6.9504 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.4e-07 | 628 | 669 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r RR+ri +++ L+ l+P+ K++ +++LekA++Y++ L Sphfalx0071s0018.1.p 628 AARVRRERITERLKYLQNLIPNG-----DKVDMVTMLEKAINYVQCL 669 6799******************5.....5***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.42E-7 | 617 | 674 | No hit | No description |
PROSITE profile | PS50888 | 13.44 | 620 | 669 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-12 | 624 | 683 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-11 | 625 | 679 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-8 | 626 | 675 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-5 | 628 | 669 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MKDAESWRGV TDEEAEASSL QQALMYNNVP DNYHASIADP SSPFLPCWND KFWLHASQRA 60 EEIHAISPPS LVVDTGTFQR QQEPSMIHFT HPSSSELLHH VVRGASDDGG LWKRPDGSSP 120 VASRMHKKLV MQDLEQYSNH NIPGSMSRVS NSLQLGYNNP LPKAAGKGIA AAAAAYGASI 180 MCDKLLLQAS SAGAGALQGS SQFVEPTGVL GIHAIDDSAQ DCGIQGLLHL QQHPPQQQIQ 240 LPVVPDIVGA IEMRGLLNTG LGFSPHGNKA AVSNVWEMQQ QNSMKSFETG LGFSPSGNEA 300 AVTNMCWEMQ QQQMNIVAGM KSFNPGPYVS SAAAVGEEQD VALAGCSRAW FENKSNTAVP 360 VGFDVTHQLG GSTTQQNVAG LQQQSGVLAS SGIKWPSRVS SIPAALPAAA LPVSPVLSGQ 420 TGLRGGMDGK TSIVMQSEED LPALKGALLP RCPPAASGNT IFIDSHKQPI SSQGDAAFHG 480 SFQNAGKKPA AGGMPWSGQG ACSRFEYLST VAHKQVSQST ASGSSRALGL ALNTDMKPLA 540 HQGSANNDLQ TIAAQNAGKK PAAAGGMSWS GGGQDSCSRF EYLSTAAHKQ VSRSTASGSS 600 SRALGPALNT NLKPRARQGS ANDPQSIAAR VRRERITERL KYLQNLIPNG DKVDMVTMLE 660 KAINYVQCLE LQIRMLKDDS LWPKALGALP NTLQELQELA GPEIAGQGQC KSDIVESEPK 720 VSTELVEKDR ANPSRSHS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 5e-26 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0071s0018.1.p |