PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0070s0099.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 471aa MW: 50058.4 Da PI: 8.4092

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0070s0099.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	44	104	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+++ Sphfalx0070s0099.1.p 44 PDQVVPCPRCQSLNTKFCYYNNYSLTQPRHFCKNCRRYWTAGGTLRNVPVGGGCRKNKRAK 104 68899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-27	42	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	45	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAMEASIHSG NEEQQQQQQQ QQQEKKASQL FAQRALQERR LKPPDQVVPC PRCQSLNTKF 60 CYYNNYSLTQ PRHFCKNCRR YWTAGGTLRN VPVGGGCRKN KRAKHQQQQQ QHRGNAVDHA 120 SVLQLQPSLI SGISTVTDSF SAQQQQHSAQ LQGSSSSASF FNGEPGGAMH FLTSSQQQQQ 180 QQQPTWSSQQ SDVQANVEAA GALGFTTHSG QGGPAGQNLS HHSQAFANSG IMSLGLFNSV 240 SSKSDAGAAA GGGGGPGLST HTSQQVHAGG RGGDLTAFFE NPAAAYSTRV GNLGALSEAG 300 HHGSSYNHNT VSSDDIAAQE ASSYARGGGG GGGDIWRNLQ QQQQLKQEVL WGQPESERSA 360 SVLDLNSRQQ ASKSSAKFSS PGSTLSPAAA GAGHGLLDHA ESKLAVRPAA VGWQQQQQQQ 420 QQSASHHHHQ AGGMPNYETV TPPDTHFWSN PGWPPLDLHT LHGSGGTQLL *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAMEASIHSG NEEQQQQQQQ QQQEKKASQL FAQRALQERR LKPPDQVVPC PRCQSLNTKF  60
CYYNNYSLTQ PRHFCKNCRR YWTAGGTLRN VPVGGGCRKN KRAKHQQQQQ QHRGNAVDHA  120
SVLQLQPSLI SGISTVTDSF SAQQQQHSAQ LQGSSSSASF FNGEPGGAMH FLTSSQQQQQ  180
QQQPTWSSQQ SDVQANVEAA GALGFTTHSG QGGPAGQNLS HHSQAFANSG IMSLGLFNSV  240
SSKSDAGAAA GGGGGPGLST HTSQQVHAGG RGGDLTAFFE NPAAAYSTRV GNLGALSEAG  300
HHGSSYNHNT VSSDDIAAQE ASSYARGGGG GGGDIWRNLQ QQQQLKQEVL WGQPESERSA  360
SVLDLNSRQQ ASKSSAKFSS PGSTLSPAAA GAGHGLLDHA ESKLAVRPAA VGWQQQQQQQ  420
QQSASHHHHQ AGGMPNYETV TPPDTHFWSN PGWPPLDLHT LHGSGGTQLL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Sphfalx0070s0099.1.p