PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0070s0028.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family SBP
Protein Properties Length: 820aa    MW: 86384.1 Da    PI: 6.2681
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0070s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.43.5e-42273349176
                           --SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                   SBP   1 lCqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                           +CqvegC+adls++ keyhrrhkvCe+hsk+p+++v g+eqrfCqqCsrfh lsefDe+krsCrrrLa+hnerrrk+
  Sphfalx0070s0028.1.p 273 RCQVEGCTADLSSVlKEYHRRHKVCEMHSKTPNAVVGGREQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNERRRKP 349
                           6**********9866************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33269336IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.035271349IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38272352IPR004333Transcription factor, SBP-box
PfamPF031101.0E-30274348IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MAMAMSTAAT GGGGGGGGGT QCHESTRSWV NAAAIAWEQL QQNSEPAGLT SSTSTIRDGV  60
AAAAGGDLHC SGGGAISAAG ASCWELKDWE SDITLVSFSL PAAAAAAAVP APSSSIACCS  120
SCDDIITAEN SSLQAAEVVS VVKTEPEIML EPEQQQLLHA TAAPEALPVL QQLGIKLLER  180
RGVEIINDAE LLQQLVSKGA GSSSRTAAAA CGVESTTATS SVSINNAAAA AAPAVQLSTP  240
PSSMTSKRQR VQLDMSSSPA AGAQNVQVPA AARCQVEGCT ADLSSVLKEY HRRHKVCEMH  300
SKTPNAVVGG REQRFCQQCS RFHLLSEFDE GKRSCRRRLA GHNERRRKPP APAAASTSYY  360
AFPYNHHATG MTDSGCRLNT SPTSSSSSRS NNNASCLHDF HGSTAAAPAT LTQLAGADWR  420
SHMWHLQPNI RGTHQGLLMA SHDLDDDDND DDDEQYYANP FANAVNLTSS SWRSDHEHAV  480
CQSSTPGQQL QQVGGNKDGH SIFSDYFYPQ PNRLLSAFLQ SPSGPCNGQM LQEAAVAAMN  540
ASPDVTALSS CWIPLGLHEF VDGGANCQNL SLMGGWGSTE LYHNQGYCDH SQSPSGCALS  600
LLSRGLTTPY PGPALDVSKF DSTTTLDHHQ HDLVGDNSNS NNTGSNVASS THHHHVHQHD  660
QPQEQYNISL DKIYPPQSGA GQGGMGPISD HSRITDSYNF PTLQTQLQFG GGMASGNNIL  720
SSLGGTLGLE MLQALVFQSN HEVQAGMRST ASGAMLSSTH QSLKVTSSDL VQSTAPSLQV  780
HHHHQAHLHH EVHAHAVLSQ TSLNHDGEFG KFGSSMWGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-292743481184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1919TGGGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-34squamosa promoter binding protein-like 3