PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0069s0076.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 840aa    MW: 91730.6 Da    PI: 6.3334
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0069s0076.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-181270357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Sphfalx0069s0076.2.p 12 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIKDCpilaNIEPKQIKVWFQNRRCREKQ 70
                          5678*****************************************************97 PP
2START151.19.5e-481703772204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+ +e+v+ka+ ++  W +++ +++g++ + +++ s++++g a+ra+ +v  ++ ++ve l d++  W  ++++ ++l    ++  
  Sphfalx0069s0076.2.p 170 IAEETVTEFVSKATGTAIDWIQLPGMKPGPDAIGIVAISHGCPGVAARACSLVGLEPSKVVEVLKDRP-SWLPDCRRLSILGSFPTAng 257
                           7899******************************************************8887777777.**************999889 PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++++a+++l+p Rdf ++Ry+  l+    vi+++S++  q  p     +s+vRae lpSg+li+p+++g++ +++v+h+dl+
  Sphfalx0069s0076.2.p 258 GTVELLYTQMYAPTTLAPpRDFCTLRYTTILENRNVVICERSLSRAQGGPMippVQSFVRAEILPSGYLIRPCEGGGCIIHIVDHMDLE 346
                           ************************************************99998999********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                            ++++++lr+l++s+++ ++kt+ a+l++++
  Sphfalx0069s0076.2.p 347 PWSVPEVLRPLYESSAVLAQKTTIAALRHLR 377
                           ***************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.208771IPR001356Homeobox domain
SuperFamilySSF466891.2E-16873IPR009057Homeodomain-like
SMARTSM003891.1E-14975IPR001356Homeobox domain
CDDcd000863.64E-161272No hitNo description
PfamPF000468.9E-161370IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-181470IPR009057Homeodomain-like
CDDcd146860.0014764100No hitNo description
PROSITE profilePS5084825.657160388IPR002913START domain
CDDcd088752.92E-77164379No hitNo description
Gene3DG3DSA:3.30.530.203.5E-23166375IPR023393START-like domain
SuperFamilySSF559615.36E-38169380No hitNo description
SMARTSM002348.6E-34169379IPR002913START domain
PfamPF018523.3E-45170377IPR002913START domain
PfamPF086706.5E-41696837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MQEDSGMDVS GKYVRYTNEQ VEALERVYHE CPKPSSIRRQ QLIKDCPILA NIEPKQIKVW  60
FQNRRCREKQ RKESSRLVTV NAKLTALNKL LMEENERLSK HSSQLTLDNH LLRQELQQMP  120
ATPGKRKIPD QAALASTDTS CDSVVTGGLP PQPTPQHSPR ASSPAELLSI AEETVTEFVS  180
KATGTAIDWI QLPGMKPGPD AIGIVAISHG CPGVAARACS LVGLEPSKVV EVLKDRPSWL  240
PDCRRLSILG SFPTANGGTV ELLYTQMYAP TTLAPPRDFC TLRYTTILEN RNVVICERSL  300
SRAQGGPMIP PVQSFVRAEI LPSGYLIRPC EGGGCIIHIV DHMDLEPWSV PEVLRPLYES  360
SAVLAQKTTI AALRHLRQLS QEASGDSAPR NGQKPAALRA LSQRLARGFN QAVNGFVEDG  420
WAATVSDGMD DVSVMINESP TTKSSQIASE RFLCTLGGGI LCAKASMLLQ NVPAALLIRF  480
LREHRSEWAD CDIDASAAAA FRSTTRNGTA GHSQLSLPLV NSSEQEELLE VVKLEQHTGA  540
PDGIHMRDNF LLQLCSGIDE NAVGVCSQLV FAPVDVSLSD DVPLLPSGFR VIPLDCHLIG  600
GSGFSRTRDL ASALEGGPEV TGLRTETGTG SSNHLRSVLT IAFQFAYEAH TRENCAAVAR  660
QYVRSVVASV QRVAIALAPS HSTPRQSPGS ANAAVLARHI LQSYRLNLGM DLARIDATDD  720
NSLFEVFWQH TDAIVCCAWK GLPEFMFANR AGLDMLETTS GDLQNLVWEK TLDEEGQKTA  780
YTDFTLVLQQ GYTYLPAGVR ISSMGRLAKY DRALAWKVMA EDDSIQCIAF LFMNWSFLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305570.0KU530557.1 Sphagnum sp. SB-2016 C3HDZ3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399215.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399216.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399218.10.0homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_024399219.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0G9Y60.0A0A0Y0G9Y6_9BRYO; C3HDZ1 (Fragment)
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]