PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0069s0076.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 855aa    MW: 93352.5 Da    PI: 6.4204
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0069s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-182785357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L k +    +++ +q+kvWFqNrR +ek+
  Sphfalx0069s0076.1.p 27 KYVRYTNEQVEALERVYHECPKPSSIRRQQLIKDCpilaNIEPKQIKVWFQNRRCREKQ 85
                          5678*****************************************************97 PP
2START151.19.8e-481853922204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+ +e+v+ka+ ++  W +++ +++g++ + +++ s++++g a+ra+ +v  ++ ++ve l d++  W  ++++ ++l    ++  
  Sphfalx0069s0076.1.p 185 IAEETVTEFVSKATGTAIDWIQLPGMKPGPDAIGIVAISHGCPGVAARACSLVGLEPSKVVEVLKDRP-SWLPDCRRLSILGSFPTAng 272
                           7899******************************************************8887777777.**************999889 PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++++a+++l+p Rdf ++Ry+  l+    vi+++S++  q  p     +s+vRae lpSg+li+p+++g++ +++v+h+dl+
  Sphfalx0069s0076.1.p 273 GTVELLYTQMYAPTTLAPpRDFCTLRYTTILENRNVVICERSLSRAQGGPMippVQSFVRAEILPSGYLIRPCEGGGCIIHIVDHMDLE 361
                           ************************************************99998999********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                            ++++++lr+l++s+++ ++kt+ a+l++++
  Sphfalx0069s0076.1.p 362 PWSVPEVLRPLYESSAVLAQKTTIAALRHLR 392
                           ***************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2082286IPR001356Homeobox domain
SuperFamilySSF466891.24E-162388IPR009057Homeodomain-like
SMARTSM003891.1E-142490IPR001356Homeobox domain
CDDcd000863.74E-162787No hitNo description
PfamPF000469.1E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-182985IPR009057Homeodomain-like
CDDcd146860.0014979115No hitNo description
PROSITE profilePS5084825.657175403IPR002913START domain
CDDcd088753.36E-77179394No hitNo description
Gene3DG3DSA:3.30.530.203.6E-23181390IPR023393START-like domain
SuperFamilySSF559615.63E-38184395No hitNo description
SMARTSM002348.6E-34184394IPR002913START domain
PfamPF018523.4E-45185392IPR002913START domain
PfamPF086706.7E-41711852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MGLEPCSTGY RNLKAMQEDS GMDVSGKYVR YTNEQVEALE RVYHECPKPS SIRRQQLIKD  60
CPILANIEPK QIKVWFQNRR CREKQRKESS RLVTVNAKLT ALNKLLMEEN ERLSKHSSQL  120
TLDNHLLRQE LQQMPATPGK RKIPDQAALA STDTSCDSVV TGGLPPQPTP QHSPRASSPA  180
ELLSIAEETV TEFVSKATGT AIDWIQLPGM KPGPDAIGIV AISHGCPGVA ARACSLVGLE  240
PSKVVEVLKD RPSWLPDCRR LSILGSFPTA NGGTVELLYT QMYAPTTLAP PRDFCTLRYT  300
TILENRNVVI CERSLSRAQG GPMIPPVQSF VRAEILPSGY LIRPCEGGGC IIHIVDHMDL  360
EPWSVPEVLR PLYESSAVLA QKTTIAALRH LRQLSQEASG DSAPRNGQKP AALRALSQRL  420
ARGFNQAVNG FVEDGWAATV SDGMDDVSVM INESPTTKSS QIASERFLCT LGGGILCAKA  480
SMLLQNVPAA LLIRFLREHR SEWADCDIDA SAAAAFRSTT RNGTAGHSQL SLPLVNSSEQ  540
EELLEVVKLE QHTGAPDGIH MRDNFLLQLC SGIDENAVGV CSQLVFAPVD VSLSDDVPLL  600
PSGFRVIPLD CHLIGGSGFS RTRDLASALE GGPEVTGLRT ETGTGSSNHL RSVLTIAFQF  660
AYEAHTRENC AAVARQYVRS VVASVQRVAI ALAPSHSTPR QSPGSANAAV LARHILQSYR  720
LNLGMDLARI DATDDNSLFE VFWQHTDAIV CCAWKGLPEF MFANRAGLDM LETTSGDLQN  780
LVWEKTLDEE GQKTAYTDFT LVLQQGYTYL PAGVRISSMG RLAKYDRALA WKVMAEDDSI  840
QCIAFLFMNW SFLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU5305570.0KU530557.1 Sphagnum sp. SB-2016 C3HDZ3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024399219.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0Y0G9Y60.0A0A0Y0G9Y6_9BRYO; C3HDZ1 (Fragment)
STRINGPP1S15_11V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]