PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0068s0070.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family E2F/DP
Protein Properties Length: 322aa    MW: 35390.6 Da    PI: 5.7495
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0068s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.22.4e-2745128171
               E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           +++k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Sphfalx0068s0070.1.p  45 KNGKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpdsphispdqqqyDEKNIRRRVYDALNVLMAMGIILK-DKKDIQWKG 128
                           579*********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-4542133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3445128IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-2547128IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.1E-2148129IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.60E-41133237IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.05E-40134290No hitNo description
SMARTSM011389.3E-55135316IPR014889Transcription factor DP, C-terminal
PfamPF087819.9E-37136246IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGSSNGVDSR LLQHLDGAAD DPDSPDTDVT GGKKKRGPRA PAGEKNGKGL RHFSMKVCEK  60
VESKGRTTYN EVADELVAEF TNPDSPHISP DQQQYDEKNI RRRVYDALNV LMAMGIILKD  120
KKDIQWKGLP SASLDDVQEL KAEGMRVRGR IERKAAYLHE LQAQMTGLQN LVSRNERLYH  180
GTNSVPAGGV ALPFILVQTR PQATVEVEIS EDMQVVHFDF NSTPFELHDD AYVLKAMSLQ  240
EHQGSETAEV MGHTDFDDGL GCNFDEDSPP LSSIFQHSSF PPHTTSPYYP VSMPSAAAKG  300
SPWPPVPGIL KARVKHENLS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3939133193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372178.11e-168transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-107DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2K1KU621e-166A0A2K1KU62_PHYPA; Uncharacterized protein
STRINGPP1S74_252V6.11e-167(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-109Transcription factor DP